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Get unavailable ontologies from OntoBee endpoint #126

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cthoyt opened this issue Nov 11, 2021 · 0 comments

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cthoyt commented Nov 11, 2021

Combine a query like

prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
prefix owl: <http://www.w3.org/2002/07/owl#>

SELECT distinct
  ?s ?label
  WHERE {
    GRAPH <http://purl.obolibrary.org/obo/merged/CHEMINF> { 
      ?s rdf:type owl:Class .
      ?s rdfs:label ?label
      FILTER strstarts(str(?s), "http://semanticscience.org/resource/CHEMINF_")
    } 
}

With code like:

def _run_query(query, base: str):
    logger.debug("running query: %s", query)
    res = requests.get(base, params={"query": query, "format": "csv"})
    return pd.read_csv(StringIO(res.text), sep=",")

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