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simulation_1.sedml
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simulation_1.sedml
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<?xml version="1.0" encoding="UTF-8"?>
<sedML xmlns="http://sed-ml.org/sed-ml/level1/version3" xmlns:sbml="http://www.sbml.org/sbml/level2/version4" level="1" version="3">
<listOfModels>
<model id="Ciliberto2003_Morphogenesis" name="Ciliberto2003_Morphogenesis_Checkpoint" language="urn:sedml:language:sbml" source="BIOMD0000000297_url.xml">
<listOfChanges>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='Trim']/@initialConcentration" newValue="0.084410675"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='Clb']/@initialConcentration" newValue="0.18453673"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='Sic']/@initialConcentration" newValue="0.0035491784"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='PTrim']/@initialConcentration" newValue="1.402314e-5"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='PClb']/@initialConcentration" newValue="3.020305e-5"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='SBF']/@initialConcentration" newValue="0.12405464"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='IE']/@initialConcentration" newValue="0.52220768"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='Cdc20a']/@initialConcentration" newValue="1.4384692"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='Cdc20']/@initialConcentration" newValue="1.1722378"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='Cdh1']/@initialConcentration" newValue="0.99263656"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='Swe1']/@initialConcentration" newValue="3.158858e-4"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='Swe1M']/@initialConcentration" newValue="0.018360127"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='PSwe1']/@initialConcentration" newValue="2.050078e-4"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='PSwe1M']/@initialConcentration" newValue="0.013336782"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='Mih1a']/@initialConcentration" newValue="0.80809075"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='Mcm']/@initialConcentration" newValue="0.93289256"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='BE']/@initialConcentration" newValue="2.429618e-4"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='Cln']/@initialConcentration" newValue="0.053600963"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='mass']/@initialConcentration" newValue="0.80224854"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='compartment']/@size" newValue="1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kswe_prime']/@value" newValue="2"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kswe_doubleprime']/@value" newValue="0.01"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kswe_tripleprime']/@value" newValue="0.2"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kmih_prime']/@value" newValue="5"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='Mih_ast']/@value" newValue="0"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kmih_doubleprime']/@value" newValue="0.5"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='Mih']/@value" newValue="0"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='IEtot']/@value" newValue="1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='Cdh1tot']/@value" newValue="1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='Mih1tot']/@value" newValue="1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='Mcmtot']/@value" newValue="1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='SBFtot']/@value" newValue="1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kdiss']/@value" newValue="0.1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kdsic_prime']/@value" newValue="1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kdsic_doubleprime']/@value" newValue="3"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kdsic']/@value" newValue="0.01"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kdclb_doubleprime']/@value" newValue="1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kdclb_tripleprime']/@value" newValue="0.1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kdclb_prime']/@value" newValue="0.015"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kass']/@value" newValue="300"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='ksclb']/@value" newValue="0.015"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='Jm']/@value" newValue="10"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='eps']/@value" newValue="0.5"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kisbf_prime']/@value" newValue="1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kisbf_doubleprime']/@value" newValue="2"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='jisbf']/@value" newValue="0.01"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kasbf_prime']/@value" newValue="1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kasbf_doubleprime']/@value" newValue="0"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='jasbf']/@value" newValue="0.01"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kiie']/@value" newValue="0.04"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='jiie']/@value" newValue="0.01"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kaie']/@value" newValue="0.1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='jaie']/@value" newValue="0.01"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kicdc20']/@value" newValue="0.25"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='jicdc20']/@value" newValue="1.000000e-3"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kdcdc20']/@value" newValue="0.1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kacdc20']/@value" newValue="1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='jacdc20']/@value" newValue="1.000000e-3"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kicdh']/@value" newValue="35"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kicdh_prime']/@value" newValue="2"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='jicdh']/@value" newValue="0.01"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='Kacdh_prime']/@value" newValue="1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='Kacdh_doubleprime']/@value" newValue="10"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='jacdh']/@value" newValue="0.01"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='khsl1']/@value" newValue="1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='BUD']/@value" newValue="0"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='Viwee']/@value" newValue="1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='Jiwee']/@value" newValue="0.05"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kdswe_prime']/@value" newValue="0.007"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='khsl1r']/@value" newValue="0.01"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='Vawee']/@value" newValue="0.3"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='Jawee']/@value" newValue="0.05"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='ksswe']/@value" newValue="0.0025"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kssweC']/@value" newValue="0"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='Vimih']/@value" newValue="0.3"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='jimih']/@value" newValue="0.1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='Vamih']/@value" newValue="1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='Jamih']/@value" newValue="0.1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kimcm']/@value" newValue="0.15"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='jimcm']/@value" newValue="0.1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kamcm']/@value" newValue="1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='jamcm']/@value" newValue="0.1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kdbud']/@value" newValue="0.1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='ksbud']/@value" newValue="0.1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kssic']/@value" newValue="0.1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kdcln']/@value" newValue="0.1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kscln']/@value" newValue="0.1"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kscdc20_prime']/@value" newValue="0.005"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kscdc20_doubleprime']/@value" newValue="0.3"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='jscdc20']/@value" newValue="0.3"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='kdswe_doubleprime']/@value" newValue="0.05"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='mu']/@value" newValue="0.005"/>
<changeAttribute target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='flag']/@value" newValue="{'value': '2.2323'}"/>
</listOfChanges>
</model>
</listOfModels>
<listOfSimulations>
<uniformTimeCourse id="simulation" initialTime="0" outputStartTime="0" outputEndTime="1" numberOfPoints="10">
<algorithm kisaoID="KISAO:0000019"/>
</uniformTimeCourse>
</listOfSimulations>
</sedML>