diff --git a/.github/workflows/cd.yaml b/.github/workflows/cd.yaml
index 0de5c4ff8..8cee31544 100644
--- a/.github/workflows/cd.yaml
+++ b/.github/workflows/cd.yaml
@@ -4,7 +4,7 @@ on:
   workflow_dispatch:
 
 jobs:
-  build-and-deploy-microservices:
+  configure-environment:
     runs-on: ubuntu-latest
     steps:
       # Step 1: Checkout repository
@@ -28,6 +28,31 @@ jobs:
           sudo apt-get install -y python3 python3-pip
           pip install pyyaml
 
+  build-base-image:
+    needs: configure-environment
+    runs-on: ubuntu-latest
+    steps:
+      - name: Get base image version
+        run: |
+          BASE_VERSION=$(echo ./assets/.BASE_VERSION)
+          echo "BASE_VERSION=$BASE_VERSION" >> $GITHUB_ENV
+          echo "Base Version: $BASE_VERSION"
+
+      - name: Build base image
+        run: |
+          sudo chmod +x ./assets/scripts/build_base.sh
+          ./assets/scripts/build_base.sh ${{ env.BASE_VERSION }}
+
+      - name: Push base image to GHCR
+        run: |
+          sudo chmod +x ./assets/scripts/push_base.sh
+          sudo chmod +x ./assets/scripts/push_image.sh
+          ./assets/scripts/push_base.sh ${{ env.BASE_VERSION }} ${{ secrets.REPO_ADMIN_GH_USERNAME }}
+
+  get-microservice-versions:
+    needs: build-base-image
+    runs-on: ubuntu-latest
+    steps:
       # Step 5: Extract API container version
       - name: Extract API container version
         id: extract_api_version
@@ -50,6 +75,10 @@ jobs:
           echo "API_VERSION=${{ env.API_VERSION }}"
           echo "WORKER_VERSION=${{ env.WORKER_VERSION }}"
 
+  build-microservice-images:
+    needs: get-microservice-versions
+    runs-on: ubuntu-latest
+    steps:
       # Step 8: Set up Docker Buildx
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@v2
@@ -58,6 +87,10 @@ jobs:
       - name: Build Docker containers with Docker Compose
         run: docker-compose build --no-cache
 
+  deploy-microservice-images:
+    needs: build-microservice-images
+    runs-on: ubuntu-latest
+    steps:
       # Step 10: Change permissions for push script
       - name: Change push script permissions
         run: chmod +x ./assets/scripts/push_image.sh
diff --git a/compose_worker/Dockerfile-compose_worker b/compose_worker/Dockerfile-compose_worker
index c83ba07fa..75ba8cef1 100644
--- a/compose_worker/Dockerfile-compose_worker
+++ b/compose_worker/Dockerfile-compose_worker
@@ -53,7 +53,7 @@ COPY . /app/worker
 ENV PATH="/root/.local/bin:$PATH"
 
 # Install only worker deps TODO: include toml in base deps
-RUN poetry add toml --group=worker --lock && poetry install --only=worker --no-cache
+RUN poetry install --only=worker --no-cache
 
 # Install Assimulo from source for Pysces
 RUN apt-get update \
@@ -71,14 +71,16 @@ RUN apt-get update \
 # && rm -rf build \
 # && poetry run python3 setup.py install --sundials-home=/usr/local --blas-home=/usr/lib/x86_64-linux-gnu
 
-# install masspy TODO: do this
-# RUN poetry run pip install biosimulators-masspy
-
 # revert numpy back to original spec
 RUN poetry remove numpy
 # RUN poetry run pip install numpy==$(poetry run python3 -c "import toml; print(toml.load('/app/pyproject.toml')['tool']['poetry']['group']['worker']['dependencies']['numpy'].strip('<'))") \
 #     && poetry lock
 
+# install masspy TODO: implement this
+RUN git clone https://github.com/biosimulators/Biosimulators_MASSpy.git \
+    && cd Biosimulators_MASSpy \
+    && rm pyproject.toml
+
 WORKDIR /app/worker
 
 RUN python3 -c "import os;files=os.listdir();import shutil;[shutil.rmtree(f) if '__pycache__' in f else None for f in files]"
diff --git a/poetry.lock b/poetry.lock
index 366237e6c..6bed2b092 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -644,6 +644,32 @@ GitPython = "*"
 ninja = "*"
 setuptools-scm = "*"
 
+[[package]]
+name = "cobra"
+version = "0.18.1"
+description = "COBRApy is a package for constraints-based modeling of biological networks"
+optional = false
+python-versions = "*"
+files = [
+    {file = "cobra-0.18.1-py2.py3-none-any.whl", hash = "sha256:027807437de57f4f63fc4ceadf13c569c8baffd5acf1e4c1ecc1e07260edd966"},
+    {file = "cobra-0.18.1.tar.gz", hash = "sha256:c1ba04b4eff13f83692cbbbe99c3240fa079d89cb41d50b08b597141a7c91eeb"},
+]
+
+[package.dependencies]
+depinfo = "*"
+future = "*"
+numpy = ">=1.13"
+optlang = ">=1.4.2"
+pandas = ">=0.17.0"
+python-libsbml-experimental = "5.18.1"
+"ruamel.yaml" = ">=0.16"
+six = "*"
+swiglpk = "*"
+
+[package.extras]
+all = ["scipy"]
+array = ["scipy"]
+
 [[package]]
 name = "colorama"
 version = "0.4.6"
@@ -917,6 +943,21 @@ files = [
     {file = "decorator-5.1.1.tar.gz", hash = "sha256:637996211036b6385ef91435e4fae22989472f9d571faba8927ba8253acbc330"},
 ]
 
+[[package]]
+name = "depinfo"
+version = "2.2.0"
+description = "List any package's direct dependencies and their versions."
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "depinfo-2.2.0-py3-none-any.whl", hash = "sha256:3d9ba933e7a9d718b9915f75c844a38c5603cd3cdba1816ab95e0b148b100d8f"},
+    {file = "depinfo-2.2.0.tar.gz", hash = "sha256:e0971be11519a823b126c875e17ad3ad8adaa6a86737395b9dbcef3ca0e77b0c"},
+]
+
+[package.extras]
+development = ["black", "isort", "tox"]
+rich = ["rich"]
+
 [[package]]
 name = "dill"
 version = "0.3.9"
@@ -1228,6 +1269,17 @@ ufo = ["fs (>=2.2.0,<3)"]
 unicode = ["unicodedata2 (>=15.1.0)"]
 woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"]
 
+[[package]]
+name = "future"
+version = "1.0.0"
+description = "Clean single-source support for Python 3 and 2"
+optional = false
+python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
+files = [
+    {file = "future-1.0.0-py3-none-any.whl", hash = "sha256:929292d34f5872e70396626ef385ec22355a1fae8ad29e1a734c3e43f9fbc216"},
+    {file = "future-1.0.0.tar.gz", hash = "sha256:bd2968309307861edae1458a4f8a4f3598c03be43b97521076aebf5d94c07b05"},
+]
+
 [[package]]
 name = "gitdb"
 version = "4.0.11"
@@ -2133,6 +2185,35 @@ files = [
     {file = "markupsafe-3.0.2.tar.gz", hash = "sha256:ee55d3edf80167e48ea11a923c7386f4669df67d7994554387f84e7d8b0a2bf0"},
 ]
 
+[[package]]
+name = "masspy"
+version = "0.1.7"
+description = "MASSpy is a package for dynamic modeling of biological processes."
+optional = false
+python-versions = "~=3.7"
+files = [
+    {file = "masspy-0.1.7-py3-none-any.whl", hash = "sha256:cde84d3744e8143d6a5a0b9d51a656874aabeea3de1f61371c234420df29b17c"},
+    {file = "masspy-0.1.7.tar.gz", hash = "sha256:1e7e7b73cc0706305a551c97884f9c38904525c543688ac806a120e48dc349fa"},
+]
+
+[package.dependencies]
+cobra = "<0.24.0"
+libroadrunner = ">=2.2,<3.0"
+numpy = "*"
+optlang = "*"
+pandas = "*"
+scipy = "*"
+six = "*"
+sympy = "*"
+tabulate = "*"
+
+[package.extras]
+all = ["bumpversion", "gurobipy", "ipykernel", "ipywidgets", "matplotlib", "nbsphinx", "notebook", "pandoc", "pre-commit", "sphinx", "sphinx-autoapi", "sphinx-rtd-theme", "sphinxcontrib-bibtex (>=2.2,<3.0)", "towncrier", "tox"]
+development = ["bumpversion", "pre-commit", "towncrier", "tox"]
+docs = ["gurobipy", "ipykernel", "ipywidgets", "matplotlib", "nbsphinx", "notebook", "pandoc", "sphinx", "sphinx-autoapi", "sphinx-rtd-theme", "sphinxcontrib-bibtex (>=2.2,<3.0)"]
+tests = ["coverage[toml]", "pytest", "pytest-cov"]
+visualization = ["matplotlib"]
+
 [[package]]
 name = "matplotlib"
 version = "3.9.2"
@@ -2374,6 +2455,24 @@ files = [
 [package.dependencies]
 et-xmlfile = "*"
 
+[[package]]
+name = "optlang"
+version = "1.8.2"
+description = "Formulate optimization problems using sympy expressions and solve them using interfaces to third-party optimization software (e.g. GLPK)."
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "optlang-1.8.2-py2.py3-none-any.whl", hash = "sha256:e990ab097564919c815e11fa9b6301a0af052a73f53c8fb994ad404f38150515"},
+    {file = "optlang-1.8.2.tar.gz", hash = "sha256:52215bd75c265299f450bb904a890a91992446fff668d8f8e98968afbcb591c9"},
+]
+
+[package.dependencies]
+swiglpk = ">=5.0.8"
+sympy = ">=1.12.0"
+
+[package.extras]
+development = ["black", "isort", "tox"]
+
 [[package]]
 name = "orjson"
 version = "3.10.10"
@@ -3640,6 +3739,49 @@ files = [
     {file = "python_libsbml-5.20.4.tar.gz", hash = "sha256:b055f98fe65be258ae266fde343157cbf41e3ed3fc19b3698f2a66afc74cdaf8"},
 ]
 
+[[package]]
+name = "python-libsbml-experimental"
+version = "5.18.1"
+description = "LibSBML Python API"
+optional = false
+python-versions = "*"
+files = [
+    {file = "python-libsbml-experimental-5.18.1.tar.gz", hash = "sha256:0d532219867a0bef09785f100dc272f96e516a2f512cb9b3219197bef31465af"},
+    {file = "python_libsbml_experimental-5.18.1-cp27-cp27m-macosx_10_6_x86_64.whl", hash = "sha256:0aa42428ccc9904d5d74881847e801f717c6163c8affe20990bf7ad482dfc62c"},
+    {file = "python_libsbml_experimental-5.18.1-cp27-cp27m-manylinux1_i686.whl", hash = "sha256:cdc84da5785d554b5ca493b812ac7bc1bcf9404fbbbc7a0cdd986698ac2031af"},
+    {file = "python_libsbml_experimental-5.18.1-cp27-cp27m-manylinux1_x86_64.whl", hash = "sha256:e389bff2e2d535923fc1ffe39bdc6993bc7556a322a7211597625b19b53fb8fe"},
+    {file = "python_libsbml_experimental-5.18.1-cp27-cp27m-win32.whl", hash = "sha256:e03e1b94fb88f385df9152bca4eb0557aa6b9236e21b407274322b0a4c5c9f5b"},
+    {file = "python_libsbml_experimental-5.18.1-cp27-cp27m-win_amd64.whl", hash = "sha256:bd415145a2e184005d232bbb7e8e2024f511b54899b4da3ef02177516df6d37a"},
+    {file = "python_libsbml_experimental-5.18.1-cp27-cp27mu-manylinux1_i686.whl", hash = "sha256:e9fd2c52dbb7b1cf7e77f9461fd19dd7fb57d580ae8ba8115d8d470d5363fbb6"},
+    {file = "python_libsbml_experimental-5.18.1-cp27-cp27mu-manylinux1_x86_64.whl", hash = "sha256:cac52de007734b0a3a7a5c4e29259d0549a965f5706441c153bae92f7ed8f4f9"},
+    {file = "python_libsbml_experimental-5.18.1-cp33-cp33m-win32.whl", hash = "sha256:56992e684317862f98609f574fc20969e9eb7f070d20df5ff87fe37ab3fdd052"},
+    {file = "python_libsbml_experimental-5.18.1-cp33-cp33m-win_amd64.whl", hash = "sha256:0477294fdb8a1293ee003089403ef3465c1673fe4e86cc4d7f15bdecbcd60135"},
+    {file = "python_libsbml_experimental-5.18.1-cp34-cp34m-manylinux1_i686.whl", hash = "sha256:19c9444fb7a6b32cee58057f8072505a634fea93ca60af67ea14c89973ea1ec0"},
+    {file = "python_libsbml_experimental-5.18.1-cp34-cp34m-manylinux1_x86_64.whl", hash = "sha256:eb7c6eb54a59b6a05c4c4e6a08a49ecd1ea4f9937fdeb409eea5c83057d22a44"},
+    {file = "python_libsbml_experimental-5.18.1-cp34-cp34m-win32.whl", hash = "sha256:1c82bda361b4c19538caea688404c36f015c6a1b04ead5012f4d043a99f3e73a"},
+    {file = "python_libsbml_experimental-5.18.1-cp34-cp34m-win_amd64.whl", hash = "sha256:dc6bc0506fa87c72b2ff1d3665e15934192e05932ff287b9578272e51a0b84cf"},
+    {file = "python_libsbml_experimental-5.18.1-cp35-cp35m-macosx_10_6_x86_64.whl", hash = "sha256:e9fc04696a5d46f4f3da15fd3327ead7db1f9b0154792fa8b03749a75d592cb7"},
+    {file = "python_libsbml_experimental-5.18.1-cp35-cp35m-manylinux1_i686.whl", hash = "sha256:2fd010d86fc699b3dcbf9fd7bea119c114ae872262f38d78e79e6c6966cf6b2b"},
+    {file = "python_libsbml_experimental-5.18.1-cp35-cp35m-manylinux1_x86_64.whl", hash = "sha256:0e64f329fb94fee0c7c10d402c9ed330df9d086680f31947f23ceb1ede5b1217"},
+    {file = "python_libsbml_experimental-5.18.1-cp35-cp35m-win32.whl", hash = "sha256:335f8d33661b3f5b6f756e9dd39e2789a90e59b674517f6e66f4b075eeb6c40e"},
+    {file = "python_libsbml_experimental-5.18.1-cp35-cp35m-win_amd64.whl", hash = "sha256:815d88ac0c0532b08c56a36613d692bc1d6e95417cbade0562e11d808c955a4a"},
+    {file = "python_libsbml_experimental-5.18.1-cp36-cp36m-macosx_10_7_x86_64.whl", hash = "sha256:b9e927ea2d3c886a285092d420b54b660b00dc205a98dfc3f5b114161a2c8fb8"},
+    {file = "python_libsbml_experimental-5.18.1-cp36-cp36m-manylinux1_i686.whl", hash = "sha256:b032e68566c82efd9d8ee9d6aa3bf8342a712874f5d94de6f27041631d0bab1f"},
+    {file = "python_libsbml_experimental-5.18.1-cp36-cp36m-manylinux1_x86_64.whl", hash = "sha256:d68d7ff23e75e6f0fed133b52ab66fd6de92955ab5843e6e50d06e20d1c6268d"},
+    {file = "python_libsbml_experimental-5.18.1-cp36-cp36m-win32.whl", hash = "sha256:78bdcc2c148586373a91db26e07eb8df22b2a8b6120d3bd9e159ffedf6c9b581"},
+    {file = "python_libsbml_experimental-5.18.1-cp36-cp36m-win_amd64.whl", hash = "sha256:f34bdac48fdbc301148c5373f2978a97ffdf3da0e08b8d914a3f90d90765ba97"},
+    {file = "python_libsbml_experimental-5.18.1-cp37-cp37m-macosx_10_7_x86_64.whl", hash = "sha256:bb73c3bbebc9938b96fab2b1297bf69225718345546af19bfea44b191f94802c"},
+    {file = "python_libsbml_experimental-5.18.1-cp37-cp37m-manylinux1_i686.whl", hash = "sha256:a6cd2df9b34015bc88de3a872bdd1efa7d303b5cb17566fc4ef09e455e937d76"},
+    {file = "python_libsbml_experimental-5.18.1-cp37-cp37m-manylinux1_x86_64.whl", hash = "sha256:421a8ec26155f0ce8d2c6820c1bdbf0f940b3e685555a704f2044d78f9503040"},
+    {file = "python_libsbml_experimental-5.18.1-cp37-cp37m-win32.whl", hash = "sha256:3196b674ab74b6c2f6f6315e5f7ba3791393103eca8b3fb87840869cc41d164f"},
+    {file = "python_libsbml_experimental-5.18.1-cp37-cp37m-win_amd64.whl", hash = "sha256:ed0977fe09cf9e3406caeb2a96d1cfe3fd44b3a221f7f891919158bd40215e6a"},
+    {file = "python_libsbml_experimental-5.18.1-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:ff3fa037a4d1bf94c741d76cd47358c49f87b9766cd591cc137ac5d92528f2b5"},
+    {file = "python_libsbml_experimental-5.18.1-cp38-cp38-manylinux1_i686.whl", hash = "sha256:185b08e5c970595d1410ff35a112fa9c8ec0f65938b3b0568e00327e8a84ff31"},
+    {file = "python_libsbml_experimental-5.18.1-cp38-cp38-manylinux1_x86_64.whl", hash = "sha256:2e7eee315b05e1ff7eb247a2262deaeb02f06441b09f63057a5952dc25975909"},
+    {file = "python_libsbml_experimental-5.18.1-cp38-cp38-win32.whl", hash = "sha256:f0b85a1f82a07f9c02e40774955470af91777cb56fb8db1ec0a948fa77d055a9"},
+    {file = "python_libsbml_experimental-5.18.1-cp38-cp38-win_amd64.whl", hash = "sha256:14329407ebb2f01ef11c4bfd01fb893d20759823ddec60d6bb63ea2dd4a3838c"},
+]
+
 [[package]]
 name = "python-libsedml"
 version = "2.0.32"
@@ -4144,6 +4286,74 @@ files = [
 [package.dependencies]
 pyasn1 = ">=0.1.3"
 
+[[package]]
+name = "ruamel-yaml"
+version = "0.18.6"
+description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "ruamel.yaml-0.18.6-py3-none-any.whl", hash = "sha256:57b53ba33def16c4f3d807c0ccbc00f8a6081827e81ba2491691b76882d0c636"},
+    {file = "ruamel.yaml-0.18.6.tar.gz", hash = "sha256:8b27e6a217e786c6fbe5634d8f3f11bc63e0f80f6a5890f28863d9c45aac311b"},
+]
+
+[package.dependencies]
+"ruamel.yaml.clib" = {version = ">=0.2.7", markers = "platform_python_implementation == \"CPython\" and python_version < \"3.13\""}
+
+[package.extras]
+docs = ["mercurial (>5.7)", "ryd"]
+jinja2 = ["ruamel.yaml.jinja2 (>=0.2)"]
+
+[[package]]
+name = "ruamel-yaml-clib"
+version = "0.2.12"
+description = "C version of reader, parser and emitter for ruamel.yaml derived from libyaml"
+optional = false
+python-versions = ">=3.9"
+files = [
+    {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-macosx_13_0_arm64.whl", hash = "sha256:11f891336688faf5156a36293a9c362bdc7c88f03a8a027c2c1d8e0bcde998e5"},
+    {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-manylinux2014_aarch64.whl", hash = "sha256:a606ef75a60ecf3d924613892cc603b154178ee25abb3055db5062da811fd969"},
+    {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:fd5415dded15c3822597455bc02bcd66e81ef8b7a48cb71a33628fc9fdde39df"},
+    {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:f66efbc1caa63c088dead1c4170d148eabc9b80d95fb75b6c92ac0aad2437d76"},
+    {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-musllinux_1_1_i686.whl", hash = "sha256:22353049ba4181685023b25b5b51a574bce33e7f51c759371a7422dcae5402a6"},
+    {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:932205970b9f9991b34f55136be327501903f7c66830e9760a8ffb15b07f05cd"},
+    {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-win32.whl", hash = "sha256:3eac5a91891ceb88138c113f9db04f3cebdae277f5d44eaa3651a4f573e6a5da"},
+    {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-win_amd64.whl", hash = "sha256:ab007f2f5a87bd08ab1499bdf96f3d5c6ad4dcfa364884cb4549aa0154b13a28"},
+    {file = "ruamel.yaml.clib-0.2.12-cp311-cp311-macosx_13_0_arm64.whl", hash = "sha256:4a6679521a58256a90b0d89e03992c15144c5f3858f40d7c18886023d7943db6"},
+    {file = "ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux2014_aarch64.whl", hash = "sha256:d84318609196d6bd6da0edfa25cedfbabd8dbde5140a0a23af29ad4b8f91fb1e"},
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 version = "1.13.3"
@@ -4498,6 +4775,20 @@ mpmath = ">=1.1.0,<1.4"
 [package.extras]
 dev = ["hypothesis (>=6.70.0)", "pytest (>=7.1.0)"]
 
+[[package]]
+name = "tabulate"
+version = "0.9.0"
+description = "Pretty-print tabular data"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "tabulate-0.9.0-py3-none-any.whl", hash = "sha256:024ca478df22e9340661486f85298cff5f6dcdba14f3813e8830015b9ed1948f"},
+    {file = "tabulate-0.9.0.tar.gz", hash = "sha256:0095b12bf5966de529c0feb1fa08671671b3368eec77d7ef7ab114be2c068b3c"},
+]
+
+[package.extras]
+widechars = ["wcwidth"]
+
 [[package]]
 name = "tellurium"
 version = "2.2.10"
@@ -4759,4 +5050,4 @@ pyYaml = "*"
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.10"
-content-hash = "d432d7569c92ca60b9d1233f3d0daaec8bf05c22547555ee36fd81a49a22b0ef"
+content-hash = "da946c7337cc3fd35d58a8b21aa449df5c569959b8240b8591897d1ec12e427e"
diff --git a/pyproject.toml b/pyproject.toml
index 7e9faa6a1..3b8022bbe 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -17,6 +17,7 @@ google-cloud-storage = "^2.18.2"
 pymongo = {version = "^4.10.1", extras = ["srv"]}
 python-multipart = "^0.0.12"
 fastapi = "^0.115.3"
+toml = "^0.10.2"
 
 
 [tool.poetry.group.api.dependencies]
@@ -25,21 +26,22 @@ pydantic = "^2.9.2"
 uvicorn = "^0.32.0"
 pyyaml = "^6.0.2"
 httpx = "^0.27.2"
-toml = "^0.10.2"
 
 
 [tool.poetry.group.worker.dependencies]
 numpy = "<2"
+cobra = "<0.24.0"
 biosimulators-amici = "^0.1.24"
 biosimulators-copasi = "^0.2.22"
-biosimulators-pysces = "^0.1.33"
 biosimulators-tellurium = "^0.1.44"
+biosimulators-pysces = "^0.1.33"
 smoldyn = "^2.73"
 process-bigraph = "^0.0.21"
 simulariumio = "^1.11.0"
 cython = "^3.0.11"
 wheel = "^0.44.0"
-
+masspy = "^0.1.7"
+docker = "^7.1.0"
 
 [tool.poetry.group.dev.dependencies]
 pytest = "^8.3.3"