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bibliography.bib
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@online{unicode2010,
author = {Mark Davis},
title = {Unicode nearing 50% of the web},
year = 2010,
url = {https://googleblog.blogspot.com/2010/01/unicode-nearing-50-of-web.html},
urldate = {2010-01-28}
}
@article{gohos2010,
author = {Ghosh, Debashis and Dube, Tulika and Adamane, Shivaprasad},
year = {2010},
month = {12},
pages = {2142-61},
title = {Script Recognition-A Review},
volume = {32},
journal = {IEEE transactions on pattern analysis and machine intelligence},
doi = {10.1109/TPAMI.2010.30}
}
@article{Marwick_Boettiger,
author = {Ben Marwick and Carl Boettiger and Lincoln Mullen},
title = {Packaging Data Analytical Work Reproducibly Using R (and Friends)},
journal = {The American Statistician},
volume = {72},
number = {1},
pages = {80-88},
year = {2018},
publisher = {Taylor & Francis},
doi = {10.1080/00031305.2017.1375986},
URL = {
https://doi.org/10.1080/00031305.2017.1375986
},
eprint = {
https://doi.org/10.1080/00031305.2017.1375986
}
}
@Manual{palmer-penguins,
title = {palmerpenguins: Palmer Archipelago (Antarctica) penguin data},
author = {Allison Marie Horst and Alison Presmanes Hill and Kristen B Gorman},
year = {2020},
note = {R package version 0.1.0},
url = {https://allisonhorst.github.io/palmerpenguins/},
}
@article{Gorman-2014,
abstract = {BACKGROUND
Sexual segregation in vertebrate foraging niche is often associated with sexual size dimorphism (SSD), i.e., ecological sexual dimorphism. Although foraging behavior of male and female seabirds can vary markedly, differences in isotopic (carbon, \textgreek{d}13C and nitrogen, \textgreek{d}15N) foraging niche are generally more pronounced within sexually dimorphic species and during phases when competition for food is greater. We examined ecological sexual dimorphism among sympatric nesting Pygoscelis penguins asking whether environmental variability is associated with differences in male and female pre-breeding foraging niche. We predicted that all Pygoscelis species would forage sex-specifically, and that higher quality winter habitat, i.e., higher or lower sea ice coverage for a given species, would be associated with a more similar foraging niche among the sexes.
RESULTS
P2/P8 primers reliably amplified DNA of all species. On average, male Pygoscelis penguins are structurally larger than female conspecifics. However, chinstrap penguins were more sexually dimorphic in culmen and flipper features than Ad{\'e}lie and gentoo penguins. Ad{\'e}lies and gentoos were more sexually dimorphic in body mass than chinstraps. Only male and female chinstraps and gentoos occupied separate \textgreek{d}15N foraging niches. Strong year effects in \textgreek{d}15N signatures were documented for all three species, however, only for Ad{\'e}lies, did yearly variation in \textgreek{d}15N signatures tightly correlate with winter sea ice conditions. There was no evidence that variation in sex-specific foraging niche interacted with yearly winter habitat quality.
CONCLUSION
Chinstraps were most sexually size dimorphic followed by gentoos and Ad{\'e}lies. Pre-breeding sex-specific foraging niche was associated with overall SSD indices across species; male chinstrap and gentoo penguins were enriched in \textgreek{d}15N relative to females. Our results highlight previously unknown trophic pathways that link Pygoscelis penguins with variation in Southern Ocean sea ice suggesting that each sex within a species should respond similarly in pre-breeding trophic foraging to changes in future winter habitat.},
author = {Gorman, Kristen B. and Williams, Tony D. and Fraser, William R.},
year = {2014},
title = {Ecological sexual dimorphism and environmental variability within a community of antarctic penguins (Genus Pygoscelis)},
pages = {e90081},
volume = {9},
number = {3},
issn = {1932-6203},
journal = {PloS one},
doi = {10.1371/journal.pone.0090081},
file = {http://www.ncbi.nlm.nih.gov/pubmed/24599330},
file = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3943793}
}
@Book{xie2015,
title = {Dynamic Documents with {R} and knitr},
author = {Yihui Xie},
publisher = {Chapman and Hall/CRC},
address = {Boca Raton, Florida},
year = {2015},
edition = {2nd},
note = {ISBN 978-1498716963},
url = {http://yihui.name/knitr/},
}
@book{fox2016using,
title={Using the R commander: a point-and-click interface for R},
author={Fox, John},
year={2016},
publisher={Chapman and Hall/CRC}
}
@Manual{rcmdr2022manual,
title = {{Rcmdr: R Commander}},
author = {John Fox and Milan Bouchet-Valat},
year = {2021},
note = {R package version 2.7-2},
url = {https://socialsciences.mcmaster.ca/jfox/Misc/Rcmdr/},
}
@Article{rcmdr2005paper,
title = {The {R} {C}ommander: A Basic Statistics Graphical User
Interface to {R}},
author = {John Fox},
year = {2005},
journal = {Journal of Statistical Software},
volume = {14},
number = {9},
pages = {1--42},
doi = {10.18637/jss.v014.i09},
}
@article{wilson-bottleneck,
author = {Gregory V. Wilson},
title = {Where's the Real Bottleneck in Scientific Computing?},
journal = {American Scientist},
month = {January--February},
year = {2005},
note = {Discusses the difference between machine speed and human productivity, and explains why the latter is more important for most computational scientists.}
}
@article{wilson-software-carpentry,
author = {Greg Wilson},
title = {Software Carpentry: Getting Scientists to Write Better Code by Making Them More Productive},
journal = {Computing in Science \& Engineering},
month = {November--December},
year = {2006},
note = {Summarizes the what and why of Version 3 of the course.}
}
@article{wilson-learn-history,
author = {Greg Wilson},
title = {Those Who Will Not Learn From History...},
journal = {Computing in Science \& Engineering},
month = {May--June},
year = {2008},
note = {Argues that equating "scientific computing" and "high performance computing" is bad for the former, and detrimental to most computational scientists.}
}
@inproceedings{hannay-scientific-software-survey,
author = {Jo Erskine Hannay and Hans Petter Langtangen and Carolyn MacLeod and Dietmar Pfahl and Janice Singer and Greg Wilson},
title = {How Do Scientists Develop and Use Scientific Software?},
booktitle = {Proc. 2009 ICSE Workshop on Software Engineering for Computational Science and Engineering},
year = {2009},
note = {Summarizes the largest survey ever done of how scientists actually use computers, what they know, and what they find difficult.}
}
@article{wilson-scientists-really-use-computers,
author = {Gregory Wilson},
title = {How Do Scientists Really Use Computers?},
journal = {American Scientist},
month = {September--October},
year = {2009},
note = {A short (and more readable) summary of the survey reported in Hannay et al.}
}
@misc{software-carpentry,
author = {Greg Wilson},
title = {Software Carpentry web site},
url = {http://software-carpentry.org},
year = {2022},
note = {Main web site for Software Carpentry}
}