I cannot install the dependencies.

[banzouxiaopang]

I successfully imported the MesSAM extension into 3D Slicer according to the installation guide on YouTube, but when prompted to install the dependencies, the progress stays stuck on the installation screen.

[rasakereh]

There is a long list of dependencies that has to be installed. It might take a while. To make sure that it is actually progressing and is not stuck, can you please share the content of "Python Console" with me? Python Console is a panel at the bottom of the Slicer window. If you can't see it, press Ctrl+3.

[banzouxiaopang]

self._target(*self._args, **self._kwargs)
File "D:/MedSAMSlicer-0.12/MedSAMSlicer-0.12/MedSAMLite/MedSAMLite.py", line 622, in pip_install_wrapper
slicer.util.pip_install(command)
File "D:\软件（新）\Slicer 5.6.2\bin\Python\slicer\util.py", line 3887, in pip_install
_executePythonModule("pip", args)
File "D:\软件（新）\Slicer 5.6.2\bin\Python\slicer\util.py", line 3848, in _executePythonModule
logProcessOutput(proc)
File "D:\软件（新）\Slicer 5.6.2\bin\Python\slicer\util.py", line 3814, in logProcessOutput
raise CalledProcessError(retcode, proc.args, output=proc.stdout, stderr=proc.stderr)
subprocess.CalledProcessError: Command '['D:/软件（新）/Slicer 5.6.2/bin/../bin\PythonSlicer.EXE', '-m', 'pip', 'install', 'onnx>=1.16.2']' returned non-zero exit status 2.

[banzouxiaopang]

有一长串必须安装的依赖项。这可能需要一段时间。为了确保它确实在进行并且没有卡住，您能否与我分享“Python 控制台”的内容？Python 控制台是 Slicer 窗口底部的一个面板。如果看不到它，请按 Ctrl+3。

self._target（*self._args， **self._kwargs）
文件“D：/MedSAMSlicer-0.12/MedSAMSlicer-0.12/MedSAMLite/MedSAMLite.py”，第 622 行，
pip_install_wrapper slicer.util.pip_install（命令）
文件“D：\软件（新）\Slicer 5.6.2\bin\Python\slicer\util.py”，第 3887 行，pip_install
_executePythonModule（“pip”， args）
文件“D：\软件（新）\Slicer 5.6.2\bin\Python\slicer\util.py”，第 3848 行，_executePythonModule
logProcessOutput（proc）
文件“D：\软件（新）\Slicer 5.6.2\bin\Python\slicer\util.py”，第 3814 行，在 logProcessOutput
中引发 CalledProcessError（retcode， proc.args， output=proc.stdout， stderr=proc.stderr）
子进程。CalledProcessError： 命令 '['D：/软件（新）/Slicer 5.6.2/bin/../bin\PythonSlicer.EXE'， '-m'， 'pip'， 'install'， 'onnx>=1.16.2']' 返回非零退出状态 2。

[banzouxiaopang]

Thank you for your prompt and detailed response to my query. I followed your suggestion and opened the Python Console in 3D Slicer to check the progress of the dependency installation. Below is the error message I found: self._target(*self._args, **self._kwargs) File "D:/MedSAMSlicer-0.12/MedSAMSlicer-0.12/MedSAMLite/MedSAMLite.py", line 622, in run pip_install_wrapper slicer.util.pip_install(command) File "D:/Software/New/Slicer 5.6.2/bin/Python/slicer/util.py", line 3887, in pip_install _executePythonModule("pip", args) File "D:/Software/New/Slicer 5.6.2/bin/Python/slicer/util.py", line 3848, in _executePythonModule logProcessOutput(proc) File "D:/Software/New/Slicer 5.6.2/bin/Python/slicer/util.py", line 3814, in logProcessOutput raise CalledProcessError(retcode, proc.args, output=proc.stdout, stderr=proc.stderr) subprocess.CalledProcessError: Command '['D:/Software/New/Slicer 5.6.2/bin/../bin\PythonSlicer.EXE', '-m', 'pip', 'install', 'onnx>=1.16.2']' returned non-zero exit status 2. It seems that the installation process encountered an error while trying to install onnx>=1.16.2. Could you please advise on how to resolve this issue? I have a few additional details that might help troubleshoot the problem: 1. My operating system is [specify your OS, e.g., Windows 10]. 2. I am using 3D Slicer version 5.6.2. 3. I have ensured that Python and pip are correctly configured within Slicer. If you need any other logs or information, please let me know. I truly appreciate your assistance and guidance on this matter. Best regards, Caiming Weng Reza Asakereh ***@***.***> 于2024年10月29日周二 13:02写道：

…

There is a long list of dependencies that has to be installed. It might take a while. To make sure that it is actually progressing and is not stuck, can you please share the content of "Python Console" with me? Python Console is a panel at the bottom of the Slicer window. If you can't see it, press Ctrl+3. — Reply to this email directly, view it on GitHub <#46 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/BMMK7NLGC4ZXLDX4SBQVKG3Z54JF7AVCNFSM6AAAAABQXVASXOVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDINBTGIYTQNBYGU> . You are receiving this because you authored the thread.Message ID: ***@***.***>

[rasakereh]

As onnx is the first dependency in the list, i'd say the problem isn't with the package itself, but the whole installation.

first, make sure you are using a stable network connection and you're not behind any restrictive firewall.
then run this command in the python console panel (Ctrl+3) and share the output: slicer.util.pip_install("onnx>=1.16.2")
Share the output with me then. tnx!