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modified: compare_rasqual_and_fastqtl/compare_eGenes.R
Mar 14, 2018
615ed54 · Mar 14, 2018

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hcasmc_specific_eqtl

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README
README
Apr 7, 2017
calc_eqtl_specificity.py
calc_eqtl_specificity.py
Apr 7, 2017
find_tissue_specific_eqtls.R
find_tissue_specific_eqtls.R
Apr 7, 2017
forest_plot.R
forest_plot.R
Jan 23, 2017
hcasmc_specific_eqtl_pipe.sh
hcasmc_specific_eqtl_pipe.sh
Mar 14, 2018
manhattan.R
manhattan.R
Oct 26, 2016
naive_select.py
naive_select.py
Jan 19, 2017
plot_examples_of_hcasmc_eqtl.sh
plot_examples_of_hcasmc_eqtl.sh
Apr 7, 2017
plot_hcasmc_specific_eqtls.sh
plot_hcasmc_specific_eqtls.sh
Jan 23, 2017
plot_hcasmc_specific_eqtls_pval.R
plot_hcasmc_specific_eqtls_pval.R
Jan 19, 2017
plot_hcasmc_specific_eqtls_pval.sh
plot_hcasmc_specific_eqtls_pval.sh
Jan 19, 2017

README

Goal

#### hcasmc specific eqtl on full sample 
for each eqtl gene pair, determine whether its m-value s >=0.9 in HCASMC and < 0.9 in all other tissues
output these eqtl gene pair 
plot these eqtl gene pair 


#### hcasmc specific eqtl on subsampled tissue: 
# run metasoft on subsampled tissues
# repeat steps in full sample analysis 


#### tissue specific eqtls: