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whether LSA would be useful for separating the reads from host and its symbiotic reads #25

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JiaoLaboratory opened this issue May 27, 2020 · 0 comments
Open

whether LSA would be useful for separating the reads from host and its symbiotic reads #25

JiaoLaboratory opened this issue May 27, 2020 · 0 comments

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@JiaoLaboratory
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Hi,
We are assembling a genome of an non model plant organism that it s highly dependent of its symbionts. We have obtained total sequences including symbionts'.
Basically I believe I could use a metagenome assembly strategy and try to get both ,but we're not sure how to proceed.
whether LSA would be useful to separate the reads from host and its symbiotic reads here?

I would love to know what you think.
Thank you for your attention

Kunpeng li
@JiaoLaboratory JiaoLaboratory changed the title whether LSA would be useful separating the reads from host and its symbiotic reads whether LSA would be useful for separating the reads from host and its symbiotic reads May 27, 2020
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