Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Run time error : Fatal error in PMPI_Init_thread: Other MPI error, error stack: #238

Closed
am610 opened this issue Sep 14, 2021 · 1 comment

Comments

@am610
Copy link

am610 commented Sep 14, 2021

I have seen #19 but it is not clear to me what exactly is the proposed solution to this error ? I am setting up montepython in Nersc machine, as a workaround, I had tried this solution,

import mpi4py.rc mpi4py.rc.initialize = False
But no success...
So can you suggest any working solution ?

@brinckmann
Copy link
Owner

Hi,

I don't use NERSC myself, but asked around and got what I think is a useful answer:

Those error messages occur because MPI doesn't work on the login nodes on NERSC. At least, that's the only time I've seen it.

In general, users need to either submit a job to the compute nodes (the "regular" queue on NERSC; good for running chains), or request an interactive job session on one of the computing nodes (good for quick testing). NERSC has some pretty good documentation here: https://docs.nersc.gov/jobs/

Good luck!
Thejs

@dchooper dchooper closed this as completed Feb 3, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

3 participants