Fix major bug in v0.3.1: negative counts #85
Workflow file for this run
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| # Package for PyPI | |
| name: 'packaging' | |
| on: | |
| pull_request: | |
| branches: [ master, dev ] | |
| jobs: | |
| build: | |
| runs-on: 'ubuntu-latest' | |
| strategy: | |
| matrix: | |
| python-version: ['3.7'] | |
| steps: | |
| - name: 'Checkout repo' | |
| uses: actions/checkout@v3 | |
| - name: 'Set up Python ${{ matrix.python-version }}' | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| - name: 'Install packaging software' | |
| run: pip install --upgrade setuptools build twine | |
| - name: 'Print package versions' | |
| run: pip list | |
| - name: 'Package code using build' | |
| run: python -m build | |
| - name: 'Check package using twine' | |
| run: python -m twine check dist/* | |
| - name: 'Extract branch name' | |
| shell: bash | |
| run: echo "branch=$(echo ${GITHUB_REF#refs/heads/})" >>$GITHUB_OUTPUT | |
| id: extract_branch | |
| - name: 'Install from github branch and run a test' | |
| run: | | |
| pip install pytest git+https://github.com/broadinstitute/CellBender@${{ steps.extract_branch.outputs.branch }} | |
| cellbender -v |