diff --git a/wdl/03_qc.wdl b/wdl/03_qc.wdl
index 4c76af2..8420867 100644
--- a/wdl/03_qc.wdl
+++ b/wdl/03_qc.wdl
@@ -6,7 +6,7 @@
 
 ##########################################################################################
 
-import "master_vcf_qc.wdl" as vcf_qc
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/master_vcf_qc.wdl" as vcf_qc
 
 workflow variant_filtering_qc {
 
diff --git a/wdl/BAFFromGVCFs.wdl b/wdl/BAFFromGVCFs.wdl
index 2a666cf..1c94b6b 100644
--- a/wdl/BAFFromGVCFs.wdl
+++ b/wdl/BAFFromGVCFs.wdl
@@ -10,7 +10,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow BAFFromGVCFs {
   input {
diff --git a/wdl/BAFFromShardedVCF.wdl b/wdl/BAFFromShardedVCF.wdl
index 701cdc1..0bbe2b8 100644
--- a/wdl/BAFFromShardedVCF.wdl
+++ b/wdl/BAFFromShardedVCF.wdl
@@ -8,8 +8,8 @@
 
 version 1.0
 
-import "BAFFromGVCFs.wdl" as baf
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/BAFFromGVCFs.wdl" as baf
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow BAFFromShardedVCF {
   input {
diff --git a/wdl/BAFTest.wdl b/wdl/BAFTest.wdl
index 8ad681b..85bb790 100644
--- a/wdl/BAFTest.wdl
+++ b/wdl/BAFTest.wdl
@@ -8,8 +8,8 @@
 
 version 1.0
 
-import "Tasks02.wdl" as tasks02
-import "BAFTestChromosome.wdl" as bafc
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks02.wdl" as tasks02
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/BAFTestChromosome.wdl" as bafc
 
 workflow BAFTest {
 
diff --git a/wdl/BAFTestChromosome.wdl b/wdl/BAFTestChromosome.wdl
index eb4d945..e321607 100644
--- a/wdl/BAFTestChromosome.wdl
+++ b/wdl/BAFTestChromosome.wdl
@@ -8,7 +8,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow BAFTestChromosome {
   input {
diff --git a/wdl/BatchEvidenceMerging.wdl b/wdl/BatchEvidenceMerging.wdl
index 8bd55da..b5301cd 100644
--- a/wdl/BatchEvidenceMerging.wdl
+++ b/wdl/BatchEvidenceMerging.wdl
@@ -8,7 +8,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow EvidenceMerging {
   input {
diff --git a/wdl/CNMOPS.wdl b/wdl/CNMOPS.wdl
index d05802d..7026576 100644
--- a/wdl/CNMOPS.wdl
+++ b/wdl/CNMOPS.wdl
@@ -8,7 +8,7 @@ version 1.0
 
 ##########################################################################################
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 ## cnMOPS worflow definition ##
 ## mode = sex (1=male, 2=female)
diff --git a/wdl/CleanVcf.wdl b/wdl/CleanVcf.wdl
index c41f5cf..0cc2ee6 100644
--- a/wdl/CleanVcf.wdl
+++ b/wdl/CleanVcf.wdl
@@ -6,8 +6,8 @@ version 1.0
 # based on snapshot 20
 # https://portal.firecloud.org/#methods/Talkowski-SV/05_CleanVCF3/20/wdl
 
-import "Structs.wdl"
-import "Tasks0506.wdl" as MiniTasks
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks0506.wdl" as MiniTasks
 
 workflow CleanVcf {
   input {
diff --git a/wdl/ClusterSingleChromosome.wdl b/wdl/ClusterSingleChromosome.wdl
index 63e948b..fc25ba0 100644
--- a/wdl/ClusterSingleChromosome.wdl
+++ b/wdl/ClusterSingleChromosome.wdl
@@ -8,8 +8,8 @@ version 1.0
 
 # Distributed under terms of the MIT License
 
-import "Tasks0506.wdl" as MiniTasks
-import "ShardedCluster.wdl" as ShardedCluster
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks0506.wdl" as MiniTasks
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/ShardedCluster.wdl" as ShardedCluster
 
 # Workflow to perform sharding & clustering of a vcf for a single chromosome
 workflow ClusterSingleChrom {
diff --git a/wdl/CollectCoverage.wdl b/wdl/CollectCoverage.wdl
index 417ffb3..1731fdf 100644
--- a/wdl/CollectCoverage.wdl
+++ b/wdl/CollectCoverage.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow CollectCoverage {
 
diff --git a/wdl/CombineReassess.wdl b/wdl/CombineReassess.wdl
index 562d19b..6b54640 100644
--- a/wdl/CombineReassess.wdl
+++ b/wdl/CombineReassess.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow CombineReassess {
   input {
diff --git a/wdl/CombineRegeno.wdl b/wdl/CombineRegeno.wdl
index 72bf8f3..d8045cd 100644
--- a/wdl/CombineRegeno.wdl
+++ b/wdl/CombineRegeno.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow MergeCohortVcfs {
   input {
diff --git a/wdl/CramToBam.wdl b/wdl/CramToBam.wdl
index 4a5a73e..a8fbc63 100644
--- a/wdl/CramToBam.wdl
+++ b/wdl/CramToBam.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow CramToBam {
   input {
diff --git a/wdl/Delly.wdl b/wdl/Delly.wdl
index ff90b3a..a0d6a2f 100644
--- a/wdl/Delly.wdl
+++ b/wdl/Delly.wdl
@@ -23,7 +23,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow Delly {
   # Run Delly SV detection algorithm on whole genomes in array of
diff --git a/wdl/DepthClustering.wdl b/wdl/DepthClustering.wdl
index bfb4fb3..b6cae05 100644
--- a/wdl/DepthClustering.wdl
+++ b/wdl/DepthClustering.wdl
@@ -8,7 +8,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow ClusterDepth {
   input {
diff --git a/wdl/DepthPreprocessing.wdl b/wdl/DepthPreprocessing.wdl
index b937427..216935b 100644
--- a/wdl/DepthPreprocessing.wdl
+++ b/wdl/DepthPreprocessing.wdl
@@ -8,7 +8,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow MergeDepth {
   input {
diff --git a/wdl/FilterOutliers.wdl b/wdl/FilterOutliers.wdl
index 7f9aeff..967666a 100644
--- a/wdl/FilterOutliers.wdl
+++ b/wdl/FilterOutliers.wdl
@@ -14,7 +14,7 @@ version 1.0
 
 # Distributed under terms of the MIT License
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 # Workflow to identify & filter outliers from VCFs after module 03 (random forest)
 workflow FilterOutlierSamples {
diff --git a/wdl/GATKSVPipelineSingleSample.wdl b/wdl/GATKSVPipelineSingleSample.wdl
index 71ec408..879db95 100644
--- a/wdl/GATKSVPipelineSingleSample.wdl
+++ b/wdl/GATKSVPipelineSingleSample.wdl
@@ -1,21 +1,21 @@
 version 1.0
 
-import "Module00a.wdl" as m00a
-import "Module00b.wdl" as m00b
-import "PloidyEstimation.wdl" as pe
-import "Module00c.wdl" as m00c
-import "DepthPreprocessing.wdl" as dpn
-import "Module01.wdl" as m01
-import "Module02.wdl" as m02
-import "SRTest.wdl" as SRTest
-import "Module03.wdl" as m03
-import "Module04.wdl" as m04
-import "Module05_06.wdl" as m0506
-import "GermlineCNVCase.wdl" as gcnv
-import "SingleSampleFiltering.wdl" as SingleSampleFiltering
-import "GATKSVPipelineSingleSampleMetrics.wdl" as SingleSampleMetrics
-import "Utils.wdl" as utils
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module00a.wdl" as m00a
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module00b.wdl" as m00b
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/PloidyEstimation.wdl" as pe
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module00c.wdl" as m00c
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/DepthPreprocessing.wdl" as dpn
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module01.wdl" as m01
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module02.wdl" as m02
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/SRTest.wdl" as SRTest
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module03.wdl" as m03
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module04.wdl" as m04
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module05_06.wdl" as m0506
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/GermlineCNVCase.wdl" as gcnv
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/SingleSampleFiltering.wdl" as SingleSampleFiltering
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/GATKSVPipelineSingleSampleMetrics.wdl" as SingleSampleMetrics
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Utils.wdl" as utils
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 # GATK SV Pipeline single sample mode
 # Runs Modules 00abc, 01, 03.MergePesrVcfs, 04, 05/06
diff --git a/wdl/GATKSVPipelineSingleSampleMetrics.wdl b/wdl/GATKSVPipelineSingleSampleMetrics.wdl
index a759c39..8fa669d 100644
--- a/wdl/GATKSVPipelineSingleSampleMetrics.wdl
+++ b/wdl/GATKSVPipelineSingleSampleMetrics.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "TestUtils.wdl" as tu
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TestUtils.wdl" as tu
 
 workflow SingleSampleMetrics {
   input {
diff --git a/wdl/GATKSVPipelineSingleSampleTest.wdl b/wdl/GATKSVPipelineSingleSampleTest.wdl
index 55274ca..6fe604f 100644
--- a/wdl/GATKSVPipelineSingleSampleTest.wdl
+++ b/wdl/GATKSVPipelineSingleSampleTest.wdl
@@ -1,7 +1,7 @@
 version 1.0
 
-import "GATKSVPipelineSingleSample.wdl" as module
-import "TestUtils.wdl" as utils
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/GATKSVPipelineSingleSample.wdl" as module
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TestUtils.wdl" as utils
 
 workflow GATKSVPipelineSingleSampleTest {
   input {
diff --git a/wdl/GenotypeCpxCnvs.wdl b/wdl/GenotypeCpxCnvs.wdl
index fbf22f1..7933246 100644
--- a/wdl/GenotypeCpxCnvs.wdl
+++ b/wdl/GenotypeCpxCnvs.wdl
@@ -8,8 +8,8 @@ version 1.0
 
 # Distributed under terms of the MIT License
 
-import "GenotypeCpxCnvsPerBatch.wdl" as RunDepthGenotypePerBatch
-import "Tasks0506.wdl" as MiniTasks
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/GenotypeCpxCnvsPerBatch.wdl" as RunDepthGenotypePerBatch
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks0506.wdl" as MiniTasks
 
 # Workflow to perform depth-based genotyping for a single vcf shard scattered
 # across batches on predicted CPX CNVs from 04b
diff --git a/wdl/GenotypeCpxCnvsPerBatch.wdl b/wdl/GenotypeCpxCnvsPerBatch.wdl
index 0aad7d6..27291ff 100644
--- a/wdl/GenotypeCpxCnvsPerBatch.wdl
+++ b/wdl/GenotypeCpxCnvsPerBatch.wdl
@@ -9,7 +9,7 @@ version 1.0
 
 # Distributed under terms of the MIT License
 
-import "Tasks0506.wdl" as MiniTasks
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks0506.wdl" as MiniTasks
 
 # Workflow to perform depth-based genotyping per batch
 # on predicted CPX CNVs from 04b
diff --git a/wdl/GenotypeDepthPart1.wdl b/wdl/GenotypeDepthPart1.wdl
index 9270094..a5d544b 100644
--- a/wdl/GenotypeDepthPart1.wdl
+++ b/wdl/GenotypeDepthPart1.wdl
@@ -8,7 +8,7 @@
 
 version 1.0
 
-import "TrainRDGenotyping.wdl" as rd_train
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TrainRDGenotyping.wdl" as rd_train
 
 workflow GenotypeDepthPart1 {
   input {
diff --git a/wdl/GenotypeDepthPart2.wdl b/wdl/GenotypeDepthPart2.wdl
index bd3a27c..54e08b2 100644
--- a/wdl/GenotypeDepthPart2.wdl
+++ b/wdl/GenotypeDepthPart2.wdl
@@ -8,8 +8,8 @@
 
 version 1.0
 
-import "Structs.wdl"
-import "Tasks04.wdl" as tasks04
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks04.wdl" as tasks04
 
 workflow GenotypeDepthPart2 {
   input {
diff --git a/wdl/GenotypePESRPart1.wdl b/wdl/GenotypePESRPart1.wdl
index 7521657..16c9fa8 100644
--- a/wdl/GenotypePESRPart1.wdl
+++ b/wdl/GenotypePESRPart1.wdl
@@ -8,9 +8,9 @@
 
 version 1.0
 
-import "TrainRDGenotyping.wdl" as rd_train
-import "TrainPEGenotyping.wdl" as pe_train
-import "TrainSRGenotyping.wdl" as sr_train
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TrainRDGenotyping.wdl" as rd_train
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TrainPEGenotyping.wdl" as pe_train
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TrainSRGenotyping.wdl" as sr_train
 
 workflow GenotypePESRPart1 {
   input {
diff --git a/wdl/GenotypePESRPart2.wdl b/wdl/GenotypePESRPart2.wdl
index 0ff96b7..bcafd0c 100644
--- a/wdl/GenotypePESRPart2.wdl
+++ b/wdl/GenotypePESRPart2.wdl
@@ -8,8 +8,8 @@
 
 version 1.0
 
-import "Structs.wdl"
-import "Tasks04.wdl" as tasks04
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks04.wdl" as tasks04
 
 workflow GenotypePESRPart2 {
   input {
diff --git a/wdl/Genotype_2.wdl b/wdl/Genotype_2.wdl
index bd983d3..6b11b71 100644
--- a/wdl/Genotype_2.wdl
+++ b/wdl/Genotype_2.wdl
@@ -1,5 +1,5 @@
 version 1.0
-import "Tasks04.wdl" as task04
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks04.wdl" as task04
 
 workflow Regenotype{
   input{
diff --git a/wdl/Genotype_3.wdl b/wdl/Genotype_3.wdl
index ffcd378..98aef6f 100644
--- a/wdl/Genotype_3.wdl
+++ b/wdl/Genotype_3.wdl
@@ -1,5 +1,5 @@
 version 1.0
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 workflow Regeno{
   input{
   File depth_vcf
diff --git a/wdl/GermlineCNVCase.wdl b/wdl/GermlineCNVCase.wdl
index e47e47f..bfe7634 100644
--- a/wdl/GermlineCNVCase.wdl
+++ b/wdl/GermlineCNVCase.wdl
@@ -23,7 +23,7 @@
 
 version 1.0
 
-import "GermlineCNVTasks.wdl" as CNVTasks
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/GermlineCNVTasks.wdl" as CNVTasks
 
 workflow CNVGermlineCaseWorkflow {
 
diff --git a/wdl/GermlineCNVCohort.wdl b/wdl/GermlineCNVCohort.wdl
index 9a5dcf9..286f0cc 100644
--- a/wdl/GermlineCNVCohort.wdl
+++ b/wdl/GermlineCNVCohort.wdl
@@ -4,7 +4,7 @@
 
 version 1.0
 
-import "GermlineCNVTasks.wdl" as CNVTasks
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/GermlineCNVTasks.wdl" as CNVTasks
 
 workflow CNVGermlineCohortWorkflow {
     input {
diff --git a/wdl/GermlineCNVTasks.wdl b/wdl/GermlineCNVTasks.wdl
index 734d9e5..07dfdbf 100644
--- a/wdl/GermlineCNVTasks.wdl
+++ b/wdl/GermlineCNVTasks.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 task AnnotateIntervals {
     input {
diff --git a/wdl/MakeBincovMatrix.wdl b/wdl/MakeBincovMatrix.wdl
index a24cc33..6879b0c 100644
--- a/wdl/MakeBincovMatrix.wdl
+++ b/wdl/MakeBincovMatrix.wdl
@@ -8,7 +8,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow BincovMatrix {
   input {
diff --git a/wdl/Manta.wdl b/wdl/Manta.wdl
index db9da31..f972455 100644
--- a/wdl/Manta.wdl
+++ b/wdl/Manta.wdl
@@ -23,7 +23,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow Manta {
   input {
diff --git a/wdl/MatrixQC.wdl b/wdl/MatrixQC.wdl
index e7d448c..8baad1b 100644
--- a/wdl/MatrixQC.wdl
+++ b/wdl/MatrixQC.wdl
@@ -22,7 +22,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow MatrixQC {
   input {
diff --git a/wdl/MedianCov.wdl b/wdl/MedianCov.wdl
index a8b0b30..0909214 100644
--- a/wdl/MedianCov.wdl
+++ b/wdl/MedianCov.wdl
@@ -10,7 +10,7 @@ version 1.0
 
 # Workflow definition for Calculating Median Coverage 
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow MedianCov {
   input {
diff --git a/wdl/MergeCohortVcfs.wdl b/wdl/MergeCohortVcfs.wdl
index dfaaead..e6c7c19 100644
--- a/wdl/MergeCohortVcfs.wdl
+++ b/wdl/MergeCohortVcfs.wdl
@@ -8,7 +8,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow MergeCohortVcfs {
   input {
diff --git a/wdl/Module00a.wdl b/wdl/Module00a.wdl
index 61b9022..991365e 100644
--- a/wdl/Module00a.wdl
+++ b/wdl/Module00a.wdl
@@ -6,15 +6,15 @@
 
 version 1.0
 
-import "Structs.wdl"
-import "BAFFromGVCFs.wdl" as baf
-import "BAFFromShardedVCF.wdl" as sbaf
-import "CollectCoverage.wdl" as cov
-import "CramToBam.wdl" as ctb
-import "Delly.wdl" as delly
-import "Manta.wdl" as manta
-import "PESRCollection.wdl" as pesr
-import "Whamg.wdl" as wham
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/BAFFromGVCFs.wdl" as baf
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/BAFFromShardedVCF.wdl" as sbaf
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/CollectCoverage.wdl" as cov
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/CramToBam.wdl" as ctb
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Delly.wdl" as delly
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Manta.wdl" as manta
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/PESRCollection.wdl" as pesr
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Whamg.wdl" as wham
 
 # Runs selected tools on BAM/CRAM files
 
diff --git a/wdl/Module00aMetrics.wdl b/wdl/Module00aMetrics.wdl
index 1c275b5..5457e40 100644
--- a/wdl/Module00aMetrics.wdl
+++ b/wdl/Module00aMetrics.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "TestUtils.wdl" as tu
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TestUtils.wdl" as tu
 
 workflow Module00aMetrics {
   input {
diff --git a/wdl/Module00aTest.wdl b/wdl/Module00aTest.wdl
index 5c6befc..722dbae 100644
--- a/wdl/Module00aTest.wdl
+++ b/wdl/Module00aTest.wdl
@@ -1,8 +1,8 @@
 version 1.0
 
-import "Module00a.wdl" as module
-import "Module00aMetrics.wdl" as metrics
-import "TestUtils.wdl" as utils
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module00a.wdl" as module
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module00aMetrics.wdl" as metrics
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TestUtils.wdl" as utils
 
 workflow Module00aTest {
   input {
diff --git a/wdl/Module00b.wdl b/wdl/Module00b.wdl
index e8e7f31..72f7e45 100644
--- a/wdl/Module00b.wdl
+++ b/wdl/Module00b.wdl
@@ -6,11 +6,11 @@ version 1.0
 
 ##########################################################################################
 
-import "Structs.wdl"
-import "MakeBincovMatrix.wdl" as mbm
-import "PloidyEstimation.wdl" as pe
-import "RawVcfQC.wdl" as vcfqc
-import "WGD.wdl" as wgd
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/MakeBincovMatrix.wdl" as mbm
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/PloidyEstimation.wdl" as pe
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/RawVcfQC.wdl" as vcfqc
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/WGD.wdl" as wgd
 
 # Runs single sample tasks on collected evidence:
 #   - Ploidy determination
diff --git a/wdl/Module00c.wdl b/wdl/Module00c.wdl
index 15e0f5a..4eba9ab 100644
--- a/wdl/Module00c.wdl
+++ b/wdl/Module00c.wdl
@@ -6,18 +6,18 @@ version 1.0
 
 ##########################################################################################
 
-import "Structs.wdl"
-import "BatchEvidenceMerging.wdl" as bem
-import "CNMOPS.wdl" as cnmops
-import "CollectCoverage.wdl" as cov
-import "DepthPreprocessing.wdl" as dpn
-import "MakeBincovMatrix.wdl" as mbm
-import "MatrixQC.wdl" as mqc
-import "MedianCov.wdl" as mc
-import "PESRPreprocessing.wdl" as pp
-import "GermlineCNVCase.wdl" as gcnv
-import "PloidyEstimation.wdl" as pe
-import "TinyResolve.wdl" as tiny
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/BatchEvidenceMerging.wdl" as bem
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/CNMOPS.wdl" as cnmops
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/CollectCoverage.wdl" as cov
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/DepthPreprocessing.wdl" as dpn
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/MakeBincovMatrix.wdl" as mbm
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/MatrixQC.wdl" as mqc
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/MedianCov.wdl" as mc
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/PESRPreprocessing.wdl" as pp
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/GermlineCNVCase.wdl" as gcnv
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/PloidyEstimation.wdl" as pe
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TinyResolve.wdl" as tiny
 
 # Batch-level workflow:
 #   - Merge sample evidence data into a single batch
diff --git a/wdl/Module00cMetrics.wdl b/wdl/Module00cMetrics.wdl
index 009f08e..56ac432 100644
--- a/wdl/Module00cMetrics.wdl
+++ b/wdl/Module00cMetrics.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "TestUtils.wdl" as tu
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TestUtils.wdl" as tu
 
 workflow Module00cMetrics {
   input {
diff --git a/wdl/Module00cTest.wdl b/wdl/Module00cTest.wdl
index d08ff73..90a2119 100644
--- a/wdl/Module00cTest.wdl
+++ b/wdl/Module00cTest.wdl
@@ -1,8 +1,8 @@
 version 1.0
 
-import "Module00c.wdl" as module
-import "Module00cMetrics.wdl" as metrics
-import "TestUtils.wdl" as utils
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module00c.wdl" as module
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module00cMetrics.wdl" as metrics
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TestUtils.wdl" as utils
 
 workflow Module00cTest {
   input {
diff --git a/wdl/Module01.wdl b/wdl/Module01.wdl
index 1d3becb..4839acf 100644
--- a/wdl/Module01.wdl
+++ b/wdl/Module01.wdl
@@ -8,8 +8,8 @@
 
 version 1.0
 
-import "PESRClustering.wdl" as pesr
-import "DepthClustering.wdl" as depth
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/PESRClustering.wdl" as pesr
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/DepthClustering.wdl" as depth
 
 workflow Module01 {
   input {
diff --git a/wdl/Module01Metrics.wdl b/wdl/Module01Metrics.wdl
index 97b5b4d..6878bca 100644
--- a/wdl/Module01Metrics.wdl
+++ b/wdl/Module01Metrics.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "TestUtils.wdl" as tu
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TestUtils.wdl" as tu
 
 workflow Module01Metrics {
   input {
diff --git a/wdl/Module01Test.wdl b/wdl/Module01Test.wdl
index 6ed97dc..027f9bd 100644
--- a/wdl/Module01Test.wdl
+++ b/wdl/Module01Test.wdl
@@ -1,8 +1,8 @@
 version 1.0
 
-import "Module01.wdl" as module
-import "Module01Metrics.wdl" as metrics
-import "TestUtils.wdl" as utils
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module01.wdl" as module
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module01Metrics.wdl" as metrics
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TestUtils.wdl" as utils
 
 workflow Module01Test {
   input {
diff --git a/wdl/Module02.wdl b/wdl/Module02.wdl
index 7399111..27156e3 100644
--- a/wdl/Module02.wdl
+++ b/wdl/Module02.wdl
@@ -8,11 +8,11 @@
 
 version 1.0
 
-import "PETest.wdl" as pet
-import "RDTest.wdl" as rdt
-import "SRTest.wdl" as srt
-import "BAFTest.wdl" as baft
-import "Tasks02.wdl" as tasks02
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/PETest.wdl" as pet
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/RDTest.wdl" as rdt
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/SRTest.wdl" as srt
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/BAFTest.wdl" as baft
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks02.wdl" as tasks02
 
 workflow Module02 {
   input {
diff --git a/wdl/Module02Metrics.wdl b/wdl/Module02Metrics.wdl
index b4ebc52..9f359ad 100644
--- a/wdl/Module02Metrics.wdl
+++ b/wdl/Module02Metrics.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "TestUtils.wdl" as tu
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TestUtils.wdl" as tu
 
 workflow Module02Metrics {
   input {
diff --git a/wdl/Module02Test.wdl b/wdl/Module02Test.wdl
index a8eaf46..f4fc787 100644
--- a/wdl/Module02Test.wdl
+++ b/wdl/Module02Test.wdl
@@ -1,8 +1,8 @@
 version 1.0
 
-import "Module02.wdl" as module
-import "Module02Metrics.wdl" as metrics
-import "TestUtils.wdl" as utils
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module02.wdl" as module
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module02Metrics.wdl" as metrics
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TestUtils.wdl" as utils
 
 workflow Module02Test {
   input {
diff --git a/wdl/Module03.wdl b/wdl/Module03.wdl
index 9466c94..aeae2f4 100644
--- a/wdl/Module03.wdl
+++ b/wdl/Module03.wdl
@@ -8,7 +8,7 @@
 
 version 1.0
 
-import "FilterOutliers.wdl" as filter_outliers
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/FilterOutliers.wdl" as filter_outliers
 
 workflow Module03 {
   input {
diff --git a/wdl/Module03Metrics.wdl b/wdl/Module03Metrics.wdl
index a3c67f5..186341d 100644
--- a/wdl/Module03Metrics.wdl
+++ b/wdl/Module03Metrics.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "TestUtils.wdl" as tu
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TestUtils.wdl" as tu
 
 workflow Module03Metrics {
   input {
diff --git a/wdl/Module03Test.wdl b/wdl/Module03Test.wdl
index 496773d..21701b1 100644
--- a/wdl/Module03Test.wdl
+++ b/wdl/Module03Test.wdl
@@ -1,8 +1,8 @@
 version 1.0
 
-import "Module03.wdl" as module
-import "Module03Metrics.wdl" as metrics
-import "TestUtils.wdl" as utils
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module03.wdl" as module
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module03Metrics.wdl" as metrics
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TestUtils.wdl" as utils
 
 workflow Module03Test {
   input {
diff --git a/wdl/Module04.wdl b/wdl/Module04.wdl
index 8f042a1..70b6249 100644
--- a/wdl/Module04.wdl
+++ b/wdl/Module04.wdl
@@ -8,11 +8,11 @@
 
 version 1.0
 
-import "GenotypePESRPart1.wdl" as gp1
-import "GenotypePESRPart2.wdl" as gp2
-import "GenotypeDepthPart1.wdl" as gd1
-import "GenotypeDepthPart2.wdl" as gd2
-import "Tasks04.wdl" as tasks04
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/GenotypePESRPart1.wdl" as gp1
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/GenotypePESRPart2.wdl" as gp2
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/GenotypeDepthPart1.wdl" as gd1
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/GenotypeDepthPart2.wdl" as gd2
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks04.wdl" as tasks04
 workflow Module04 {
   input {
     File batch_depth_vcf
diff --git a/wdl/Module04Metrics.wdl b/wdl/Module04Metrics.wdl
index 04b3b73..fdb9da1 100644
--- a/wdl/Module04Metrics.wdl
+++ b/wdl/Module04Metrics.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "TestUtils.wdl" as tu
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TestUtils.wdl" as tu
 
 workflow Module04Metrics {
   input {
diff --git a/wdl/Module04Test.wdl b/wdl/Module04Test.wdl
index 28b9779..27dfa14 100644
--- a/wdl/Module04Test.wdl
+++ b/wdl/Module04Test.wdl
@@ -1,8 +1,8 @@
 version 1.0
 
-import "Module04.wdl" as module
-import "Module04Metrics.wdl" as metrics
-import "TestUtils.wdl" as utils
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module04.wdl" as module
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module04Metrics.wdl" as metrics
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TestUtils.wdl" as utils
 
 workflow Module04Test {
   input {
diff --git a/wdl/Module04b.wdl b/wdl/Module04b.wdl
index ddc8e94..62a064e 100644
--- a/wdl/Module04b.wdl
+++ b/wdl/Module04b.wdl
@@ -1,8 +1,8 @@
 version 1.0
 
-import "Genotype_2.wdl" as g2
-import "CombineReassess.wdl" as creassess
-import "Genotype_3.wdl" as g3
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Genotype_2.wdl" as g2
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/CombineReassess.wdl" as creassess
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Genotype_3.wdl" as g3
 
 workflow Module04b{
     input{
diff --git a/wdl/Module05_06.wdl b/wdl/Module05_06.wdl
index 3ca7f54..2e89ad8 100644
--- a/wdl/Module05_06.wdl
+++ b/wdl/Module05_06.wdl
@@ -19,17 +19,17 @@ version 1.0
 
 #Imports:
 # based on snapshot 11
-import "VcfClusterSingleChromsome.wdl" as VcfClusterContig
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/VcfClusterSingleChromsome.wdl" as VcfClusterContig
 # based on snapshot 28
-import "ResolveCpxSv.wdl" as ResolveComplexContig
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/ResolveCpxSv.wdl" as ResolveComplexContig
 # based on snapshot 12
-import "ScatterCpxGenotyping.wdl" as GenotypeComplexContig
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/ScatterCpxGenotyping.wdl" as GenotypeComplexContig
 # based on snapshot 93
-import "CleanVcf.wdl" as CleanVcfContig
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/CleanVcf.wdl" as CleanVcfContig
 # based on snapshot 75
-import "master_vcf_qc.wdl" as VcfQc
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/master_vcf_qc.wdl" as VcfQc
 
-import "Tasks0506.wdl" as MiniTasks
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks0506.wdl" as MiniTasks
 
 workflow Module05_06 {
   input {
diff --git a/wdl/Module05_06Metrics.wdl b/wdl/Module05_06Metrics.wdl
index 1723454..a96499f 100644
--- a/wdl/Module05_06Metrics.wdl
+++ b/wdl/Module05_06Metrics.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "TestUtils.wdl" as tu
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TestUtils.wdl" as tu
 
 workflow Module05_06Metrics {
   input {
diff --git a/wdl/Module05_06Test.wdl b/wdl/Module05_06Test.wdl
index 05eb43d..bb07ba6 100644
--- a/wdl/Module05_06Test.wdl
+++ b/wdl/Module05_06Test.wdl
@@ -1,8 +1,8 @@
 version 1.0
 
-import "Module05_06.wdl" as module
-import "Module05_06Metrics.wdl" as metrics
-import "TestUtils.wdl" as utils
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module05_06.wdl" as module
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Module05_06Metrics.wdl" as metrics
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/TestUtils.wdl" as utils
 
 workflow Module05_06Test {
   input {
diff --git a/wdl/PESRClustering.wdl b/wdl/PESRClustering.wdl
index 55c498d..127f93e 100644
--- a/wdl/PESRClustering.wdl
+++ b/wdl/PESRClustering.wdl
@@ -8,7 +8,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow ClusterPESR {
   input {
diff --git a/wdl/PESRCollection.wdl b/wdl/PESRCollection.wdl
index d9681f1..2418683 100644
--- a/wdl/PESRCollection.wdl
+++ b/wdl/PESRCollection.wdl
@@ -8,7 +8,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 # Workflow to run PE/SR collection on a single sample
 workflow PESRCollection {
diff --git a/wdl/PESRPreprocessing.wdl b/wdl/PESRPreprocessing.wdl
index d0927c8..4a467e6 100644
--- a/wdl/PESRPreprocessing.wdl
+++ b/wdl/PESRPreprocessing.wdl
@@ -8,7 +8,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow PreprocessPESR {
   input {
diff --git a/wdl/PETest.wdl b/wdl/PETest.wdl
index 61a44d1..41830be 100644
--- a/wdl/PETest.wdl
+++ b/wdl/PETest.wdl
@@ -8,8 +8,8 @@
 
 version 1.0
 
-import "Tasks02.wdl" as tasks02
-import "PETestChromosome.wdl" as pec
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks02.wdl" as tasks02
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/PETestChromosome.wdl" as pec
 
 workflow PETest {
   input {
diff --git a/wdl/PETestChromosome.wdl b/wdl/PETestChromosome.wdl
index 9acfd77..949ec7e 100644
--- a/wdl/PETestChromosome.wdl
+++ b/wdl/PETestChromosome.wdl
@@ -9,7 +9,7 @@
 
 version 1.0
 
-import "Tasks02.wdl" as tasks02
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks02.wdl" as tasks02
 
 workflow PETestChromosome {
   input {
diff --git a/wdl/PloidyEstimation.wdl b/wdl/PloidyEstimation.wdl
index 0e3e3a7..1e681a9 100644
--- a/wdl/PloidyEstimation.wdl
+++ b/wdl/PloidyEstimation.wdl
@@ -8,7 +8,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow Ploidy {
   input {
diff --git a/wdl/RDTest.wdl b/wdl/RDTest.wdl
index c5fc625..32b60e0 100644
--- a/wdl/RDTest.wdl
+++ b/wdl/RDTest.wdl
@@ -8,8 +8,8 @@
 
 version 1.0
 
-import "Tasks02.wdl" as tasks02
-import "RDTestChromosome.wdl" as rdc
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks02.wdl" as tasks02
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/RDTestChromosome.wdl" as rdc
 
 workflow RDTest {
   input {
diff --git a/wdl/RDTestChromosome.wdl b/wdl/RDTestChromosome.wdl
index a855d73..b14dfda 100644
--- a/wdl/RDTestChromosome.wdl
+++ b/wdl/RDTestChromosome.wdl
@@ -9,7 +9,7 @@
 
 version 1.0
 
-import "Tasks02.wdl" as tasks02
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks02.wdl" as tasks02
 
 workflow RDTestChromosome {
   input {
diff --git a/wdl/RawVcfQC.wdl b/wdl/RawVcfQC.wdl
index fe84d6a..7f262e5 100644
--- a/wdl/RawVcfQC.wdl
+++ b/wdl/RawVcfQC.wdl
@@ -25,7 +25,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow RawVcfQC {
   input {
diff --git a/wdl/ResolveCpxSv.wdl b/wdl/ResolveCpxSv.wdl
index e45a934..3716eba 100644
--- a/wdl/ResolveCpxSv.wdl
+++ b/wdl/ResolveCpxSv.wdl
@@ -8,7 +8,7 @@ version 1.0
 
 # Distributed under terms of the MIT License
 
-import "Tasks0506.wdl" as MiniTasks
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks0506.wdl" as MiniTasks
 
 #Resolve complex SV for a single chromosome
 workflow ResolveComplexSv {
diff --git a/wdl/SRTest.wdl b/wdl/SRTest.wdl
index f8ac195..005ad33 100644
--- a/wdl/SRTest.wdl
+++ b/wdl/SRTest.wdl
@@ -8,8 +8,8 @@
 
 version 1.0
 
-import "Tasks02.wdl" as tasks02
-import "SRTestChromosome.wdl" as src
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks02.wdl" as tasks02
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/SRTestChromosome.wdl" as src
 
 workflow SRTest {
   input {
diff --git a/wdl/SRTestChromosome.wdl b/wdl/SRTestChromosome.wdl
index 36aead6..e2e2825 100644
--- a/wdl/SRTestChromosome.wdl
+++ b/wdl/SRTestChromosome.wdl
@@ -9,7 +9,7 @@
 
 version 1.0
 
-import "Tasks02.wdl" as tasks02
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks02.wdl" as tasks02
 
 workflow SRTestChromosome {
   input {
diff --git a/wdl/ScatterCpxGenotyping.wdl b/wdl/ScatterCpxGenotyping.wdl
index 1e32d35..29ad22d 100644
--- a/wdl/ScatterCpxGenotyping.wdl
+++ b/wdl/ScatterCpxGenotyping.wdl
@@ -9,8 +9,8 @@ version 1.0
 
 # Distributed under terms of the MIT License
 
-import "GenotypeCpxCnvs.wdl" as GenotypeCpx
-import "Tasks0506.wdl" as MiniTasks
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/GenotypeCpxCnvs.wdl" as GenotypeCpx
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks0506.wdl" as MiniTasks
 
 # Workflow to perform depth-based genotyping for a single vcf shard scattered 
 # across batches on predicted CPX CNVs from 04b
diff --git a/wdl/ShardedCluster.wdl b/wdl/ShardedCluster.wdl
index c6f02a2..e432736 100644
--- a/wdl/ShardedCluster.wdl
+++ b/wdl/ShardedCluster.wdl
@@ -8,8 +8,8 @@ version 1.0
 
 # Distributed under terms of the MIT License
 
-import "Structs.wdl"
-import "Tasks0506.wdl" as MiniTasks
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks0506.wdl" as MiniTasks
 
 # Workflow to shard a filtered vcf & run vcfcluster (sub-sub-sub workflow)
 workflow ShardedCluster {
diff --git a/wdl/SingleSampleFiltering.wdl b/wdl/SingleSampleFiltering.wdl
index f61ae9a..2d078b9 100644
--- a/wdl/SingleSampleFiltering.wdl
+++ b/wdl/SingleSampleFiltering.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 task FilterVcfBySampleGenotypeAndAddEvidenceAnnotation {
   input {
diff --git a/wdl/Tasks02.wdl b/wdl/Tasks02.wdl
index 935c351..de9e74a 100644
--- a/wdl/Tasks02.wdl
+++ b/wdl/Tasks02.wdl
@@ -6,7 +6,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 task SplitVCF {
   input {
diff --git a/wdl/Tasks04.wdl b/wdl/Tasks04.wdl
index 8a4ed6f..08ddc96 100644
--- a/wdl/Tasks04.wdl
+++ b/wdl/Tasks04.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 task SplitVariants {
   input {
diff --git a/wdl/Tasks0506.wdl b/wdl/Tasks0506.wdl
index b96eb4f..37a9fcc 100644
--- a/wdl/Tasks0506.wdl
+++ b/wdl/Tasks0506.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 # use zcat to concatenate compressed files
 # -replaces "combine" task in some workflows
diff --git a/wdl/TestUtils.wdl b/wdl/TestUtils.wdl
index 2677114..cb0f557 100644
--- a/wdl/TestUtils.wdl
+++ b/wdl/TestUtils.wdl
@@ -542,4 +542,4 @@ task PlotMetrics {
     maxRetries: 1
   }
 
-}
\ No newline at end of file
+}
diff --git a/wdl/TinyResolve.wdl b/wdl/TinyResolve.wdl
index 2351e5a..8194fb2 100644
--- a/wdl/TinyResolve.wdl
+++ b/wdl/TinyResolve.wdl
@@ -8,7 +8,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 # Does perlim translocation resolve from raw manta calls
 workflow TinyResolve {
   input {
diff --git a/wdl/TrainPEGenotyping.wdl b/wdl/TrainPEGenotyping.wdl
index 7b96378..a5f185b 100644
--- a/wdl/TrainPEGenotyping.wdl
+++ b/wdl/TrainPEGenotyping.wdl
@@ -8,8 +8,8 @@
 
 version 1.0
 
-import "Structs.wdl"
-import "Tasks04.wdl" as tasks04
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks04.wdl" as tasks04
 
 workflow TrainPEGenotyping {
   input {
diff --git a/wdl/TrainRDGenotyping.wdl b/wdl/TrainRDGenotyping.wdl
index feb004c..936c223 100644
--- a/wdl/TrainRDGenotyping.wdl
+++ b/wdl/TrainRDGenotyping.wdl
@@ -8,8 +8,8 @@
 
 version 1.0
 
-import "Structs.wdl"
-import "Tasks04.wdl" as tasks04
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks04.wdl" as tasks04
 
 workflow TrainRDGenotyping {
   input {
diff --git a/wdl/TrainSRGenotyping.wdl b/wdl/TrainSRGenotyping.wdl
index 0472fe8..66de88f 100644
--- a/wdl/TrainSRGenotyping.wdl
+++ b/wdl/TrainSRGenotyping.wdl
@@ -8,8 +8,8 @@
 
 version 1.0
 
-import "Structs.wdl"
-import "Tasks04.wdl" as tasks04
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks04.wdl" as tasks04
 
 workflow TrainSRGenotyping {
   input {
diff --git a/wdl/Utils.wdl b/wdl/Utils.wdl
index 6311adb..1b3f5c2 100644
--- a/wdl/Utils.wdl
+++ b/wdl/Utils.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 task RunQC {
   input {
diff --git a/wdl/VcfClusterSingleChromsome.wdl b/wdl/VcfClusterSingleChromsome.wdl
index 6d75b10..2787be9 100644
--- a/wdl/VcfClusterSingleChromsome.wdl
+++ b/wdl/VcfClusterSingleChromsome.wdl
@@ -8,9 +8,9 @@ version 1.0
 
 # Distributed under terms of the MIT License
 
-import "Structs.wdl"
-import "Tasks0506.wdl" as MiniTasks
-import "ClusterSingleChromosome.wdl" as VcfClusterTasks
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks0506.wdl" as MiniTasks
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/ClusterSingleChromosome.wdl" as VcfClusterTasks
 
 # Workflow to run parallelized vcf clustering for a single chromosome
 workflow VcfClusterSingleChrom {
diff --git a/wdl/WGD.wdl b/wdl/WGD.wdl
index 1d0b555..61cabdf 100644
--- a/wdl/WGD.wdl
+++ b/wdl/WGD.wdl
@@ -8,7 +8,7 @@
 
 version 1.0
 
-import "Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
 
 workflow WGD {
   input {
diff --git a/wdl/Whamg.wdl b/wdl/Whamg.wdl
index 9367b07..7595eec 100644
--- a/wdl/Whamg.wdl
+++ b/wdl/Whamg.wdl
@@ -1,7 +1,7 @@
 version 1.0
 
-import "Structs.wdl"
-import "CramToBam.wdl" as ctb
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/CramToBam.wdl" as ctb
 
 # Run Whamg SV detection algorithm on whole genome in bam or cram
 #   file, or if whitelist is provided, run whamg on whitelisted
diff --git a/wdl/collect_qc_per_sample.wdl b/wdl/collect_qc_per_sample.wdl
index 7ba620d..1f70c05 100644
--- a/wdl/collect_qc_per_sample.wdl
+++ b/wdl/collect_qc_per_sample.wdl
@@ -6,7 +6,7 @@ version 1.0
 # Contact: Ryan Collins <rlcollins@g.harvard.edu>
 # Distributed under terms of the MIT license.
 
-import "Tasks0506.wdl" as MiniTasks
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks0506.wdl" as MiniTasks
 
 # Workflow to gather lists of variant IDs per sample from an SV VCF
 workflow CollectQcPerSample {
diff --git a/wdl/master_vcf_qc.wdl b/wdl/master_vcf_qc.wdl
index 3536bea..bf07923 100644
--- a/wdl/master_vcf_qc.wdl
+++ b/wdl/master_vcf_qc.wdl
@@ -10,11 +10,11 @@ version 1.0
 # Distributed under terms of the MIT license.
 
 
-import "sharded_qc_collection.wdl" as ShardedQcCollection
-import "collect_qc_per_sample.wdl" as CollectQcPerSample
-import "per_sample_external_benchmark.wdl" as PerSampleExternalBenchmark
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/sharded_qc_collection.wdl" as ShardedQcCollection
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/collect_qc_per_sample.wdl" as CollectQcPerSample
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/per_sample_external_benchmark.wdl" as PerSampleExternalBenchmark
 
-import "Tasks0506.wdl" as MiniTasks
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks0506.wdl" as MiniTasks
 
 # Master workflow to perform comprehensive quality control (QC) on
 # an SV VCF output by the Talkowski lab SV pipeline
diff --git a/wdl/per_sample_external_benchmark.wdl b/wdl/per_sample_external_benchmark.wdl
index 5953243..ff2a067 100644
--- a/wdl/per_sample_external_benchmark.wdl
+++ b/wdl/per_sample_external_benchmark.wdl
@@ -6,7 +6,7 @@ version 1.0
 # Contact: Ryan Collins <rlcollins@g.harvard.edu>
 # Distributed under terms of the MIT license.
 
-import "Tasks0506.wdl" as MiniTasks
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks0506.wdl" as MiniTasks
 
 # Workflow to perform per-sample benchmarking from an SV VCF vs an external dataset
 workflow PerSampleExternalBenchmark {
diff --git a/wdl/qcstructs.wdl b/wdl/qcstructs.wdl
index a801344..385e7a2 100644
--- a/wdl/qcstructs.wdl
+++ b/wdl/qcstructs.wdl
@@ -7,4 +7,4 @@ struct RuntimeAttr {
     Int? boot_disk_gb
     Int? preemptible_tries
     Int? max_retries
-}
\ No newline at end of file
+}
diff --git a/wdl/sharded_qc_collection.wdl b/wdl/sharded_qc_collection.wdl
index c0925dc..abf873b 100644
--- a/wdl/sharded_qc_collection.wdl
+++ b/wdl/sharded_qc_collection.wdl
@@ -8,7 +8,7 @@ version 1.0
 
 # Workflow to gather SV VCF summary stats for an input VCF
 
-import "Tasks0506.wdl" as MiniTasks
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Tasks0506.wdl" as MiniTasks
 
 workflow ShardedQcCollection {
   input {
diff --git a/wdl/trainGCNV.wdl b/wdl/trainGCNV.wdl
index 9e21e99..33b67b1 100644
--- a/wdl/trainGCNV.wdl
+++ b/wdl/trainGCNV.wdl
@@ -1,9 +1,9 @@
 version 1.0
 
-import "Structs.wdl"
-import "CollectCoverage.wdl" as cov
-import "CramToBam.wdl" as ctb
-import "GermlineCNVCohort.wdl" as gcnv_cohort
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/Structs.wdl"
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/CollectCoverage.wdl" as cov
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/CramToBam.wdl" as ctb
+import "https://raw.githubusercontent.com/broadinstitute/gatk-sv-clinical/v0.7.1/wdl/GermlineCNVCohort.wdl" as gcnv_cohort
 
 # Trains gCNV model on a cohort with counts already collected
 workflow TrainGCNV {