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Please upgrade your scripts to python 3 #540

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gdonval opened this issue Apr 4, 2024 · 4 comments
Open

Please upgrade your scripts to python 3 #540

gdonval opened this issue Apr 4, 2024 · 4 comments

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@gdonval
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gdonval commented Apr 4, 2024

Python 2.7 was introduced 14 years ago and was EOLed 4 years ago.
It is getting very hard to install metawrap and will get even harder when conda pulls the plug.

@gdonval
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gdonval commented Apr 4, 2024

image

This is the result of

  1. technical debt;
  2. forcing X.Y.Z version instead of X;
  3. forcing specific implementations (like mkl) down our throat instead of just writing documentation.

@Gabelberg
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I really second that.
I, maybe for my faults, was not able to install metawrap in any of the metodology proposed.
Has anybody suggestions on how overcome error messages similar to the one posted by @gdonval?
Thanks

@zzzapperant
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I really second that. I, maybe for my faults, was not able to install metawrap in any of the metodology proposed. Has anybody suggestions on how overcome error messages similar to the one posted by @gdonval? Thanks

Maybe you can try conda install. I tried mamba install at first but failed.

@yqy6611
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yqy6611 commented Aug 11, 2024

I really second that.

I, maybe for my faults, was not able to install metawrap in any of the metodology proposed.

Has anybody suggestions on how overcome error messages similar to the one posted by @gdonval?

Thanks

Release the restriction of python and install Prokka and salmon into single environments respectively. Definitely okay to install dependencies with python 3.

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4 participants