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Use quant_bins to calculate abundance, but use reads.gz #551

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tiantianlili opened this issue Jul 19, 2024 · 1 comment
Open

Use quant_bins to calculate abundance, but use reads.gz #551

tiantianlili opened this issue Jul 19, 2024 · 1 comment

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@tiantianlili
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I notice that the quant_bins module requires the fq file, but I would like to use the fq.gz file, is there any way to calculate the abundance of the bins using the fq.gz file

@yqy6611
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yqy6611 commented Jul 27, 2024

Salmon supports gzipped fastq files thus you can revise the source script of quant_bin module yourself.

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