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Expected Excel output not shown #5

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stain opened this issue Jul 1, 2024 · 2 comments
Open

Expected Excel output not shown #5

stain opened this issue Jul 1, 2024 · 2 comments

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@stain
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stain commented Jul 1, 2024

When ran on national node level, output of analytical pipeline is not just the HTML files, but also Excel files like results-survival-analysis-ESP.xlsx -- these are not shown in this baseline use case

@stain
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stain commented Jul 2, 2024

I've added a minimal description to the RO-Crate metadata file as the excel file was already there in outputs, but uncertain how it was made and its columns

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stain commented Jul 3, 2024

#4 from @MarjanMeurisse added the excel generation in step 6 https://github.com/by-covid/BY-COVID_WP5_T5.2_baseline-use-case/blob/main/vaccine_effectiveness_analytical_pipeline/scripts/6_survival-analysis.QMD so we need to just wire this into the provenance RO-Crate wise.

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