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cancer type mapping #23

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jjgao opened this issue Apr 14, 2016 · 1 comment
Open

cancer type mapping #23

jjgao opened this issue Apr 14, 2016 · 1 comment

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@jjgao
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jjgao commented Apr 14, 2016 •
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legacy code oncotree code name color
mmyl MM MM
coadread COADREAD CRC
gbm GBM GBM
thca THYROID Thyroid CA
hnsc HEADNECK HNC
skcm SKCM Melanoma
hgg DIFG? HGG
lgg ENCG? LGG
luad LUAD Lung ADCA
kirp PRCC pRCC
paad PAAD Pancreatic ADCA
brca BRCA BRCA
npc NPC NPC
esca ESCA Esophageal ADCA
ucs UCS MMMT
blca BLCA Bladder CA
laml AML AML
ov HGSOC HGSOC
lihc HCC HCC
prad PRAD PCa
stad STAD Stomach ADCA
ucec UCEC Endometrial CA
cesc CESC Cervical SCC
mds MDS MDS
acc ACC ACC
lusc LUSC Lung SCC
mbl MBL MBL
kirc CCRCC ccRCC
acyc ACYC ACyC
cll CLL CLL
kich CHRCC chRCC
gbc GBC Gallbladder CA
lusm SCLC SCLC
cscc CSCC cSCC
pias PAST JPA
dlbc DLBCL DLBCL
lymbc BL BL
nbl NBL Neuroblastoma
mcl MCL MCL
all ALL ALL
mrt MRT MRT
pannet PANET PNET
@jjgao
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jjgao commented Apr 14, 2016

@schultzn what should be the Oncotree codes for LGG and HGG?

HGG paper: http://www.ncbi.nlm.nih.gov/pubmed/24705251

LGG papers: TCGA & UCSF

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