From 4be9db4426d0921ce511af3538fe09224dd075cd Mon Sep 17 00:00:00 2001
From: Onur Sumer <s.onur.sumer@gmail.com>
Date: Wed, 26 Jul 2023 14:14:22 -0400
Subject: [PATCH] get mutation data from genomic event table instead of
 mutation table (#10289)

---
 .../persistence/mybatiscolumnstore/StudyViewMapper.xml     | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatiscolumnstore/StudyViewMapper.xml b/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatiscolumnstore/StudyViewMapper.xml
index 6a27522c3cc..4bbc93232d1 100644
--- a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatiscolumnstore/StudyViewMapper.xml
+++ b/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatiscolumnstore/StudyViewMapper.xml
@@ -31,14 +31,15 @@
             COUNT(DISTINCT sample_unique_id) as numberOfProfiledCases,
             COUNT(DISTINCT sample_unique_id) as numberOfAlteredCases,
             COUNT(*) as totalCount
-        FROM mutation
+        FROM genomic_event
         <where>
-           sample_unique_id IN ( <include refid="sampleUniqueIdsFromStudyViewFilter"/>
+            variant_type = 'mutation'
+            AND
+            sample_unique_id IN ( <include refid="sampleUniqueIdsFromStudyViewFilter"/>
             <if test="applyPatientIdFilters == true">
                 INTERSECT <include refid="getSampleIdsFromPatientIds"/>
             </if> 
             )
-
         </where>
         GROUP BY hugo_gene_symbol
         ORDER BY totalCount DESC;