From 8b644cc081c4a55317746cc2982cee49204e67a0 Mon Sep 17 00:00:00 2001 From: Retype GitHub Action Date: Wed, 14 Aug 2024 19:03:13 +0000 Subject: [PATCH] Refreshes Retype-generated documentation. Process triggered by inodb. --- 404.html | 8 ++++---- about-us/index.html | 8 ++++---- architecture-overview/index.html | 8 ++++---- backend-code-organization/index.html | 8 ++++---- backend-development-guidelines/index.html | 8 ++++---- create-and-publish-virtual-study/index.html | 10 +++++----- data-loading-for-developers/index.html | 8 ++++---- data-loading-maintaining-studies/index.html | 8 ++++---- .../index.html | 8 ++++---- data-loading/index.html | 10 +++++----- .../index.html | 10 +++++----- .../authenticating-users-via-ldap/index.html | 8 ++++---- .../authenticating-users-via-saml/index.html | 8 ++++---- .../index.html | 8 ++++---- .../user-authorization/index.html | 8 ++++---- .../index.html | 10 +++++----- deployment/customization/caching/index.html | 8 ++++---- .../index.html | 8 ++++---- .../index.html | 8 ++++---- .../portal.properties--reference/index.html | 16 ++++++++-------- .../security.properties-reference/index.html | 10 +++++----- deployment/customization/studyview/index.html | 8 ++++---- .../build-from-source/index.html | 8 ++++---- .../deploying/index.html | 8 ++++---- .../import-the-seed-database/index.html | 8 ++++---- .../load-sample-cancer-study/index.html | 8 ++++---- .../pre-build-steps/index.html | 8 ++++---- .../software-requirements/index.html | 8 ++++---- deployment/docker/example_commands/index.html | 10 +++++----- deployment/docker/import_data/index.html | 10 +++++----- deployment/docker/index.html | 8 ++++---- .../docker/notes-for-non-linux/index.html | 8 ++++---- deployment/docker/using-keycloak/index.html | 10 +++++----- deployment/index.html | 8 ++++---- .../index.html | 8 ++++---- .../oncokb-data-access/index.html | 8 ++++---- .../build-different-frontend/index.html | 8 ++++---- development/cbioportal-er-diagram/index.html | 8 ++++---- development/database-versioning/index.html | 10 +++++----- development/deployment-procedure/index.html | 8 ++++---- development/documentation-site/index.html | 8 ++++---- .../feature-development-guide/index.html | 8 ++++---- development/index.html | 8 ++++---- development/manual-test-cases/index.html | 8 ++++---- development/release-procedure/index.html | 8 ++++---- .../session-service-working/index.html | 8 ++++---- downloads/index.html | 8 ++++---- file-formats/index.html | 10 +++++----- hardware-requirements/index.html | 8 ++++---- import-gene-panels/index.html | 8 ++++---- import-gene-sets/index.html | 8 ++++---- .../index.html | 8 ++++---- import-reference-genome/index.html | 8 ++++---- import-study-using-docker/index.html | 10 +++++----- imported-maf-columns/index.html | 8 ++++---- importer-tool/index.html | 8 ++++---- incremental-data-loading/index.html | 8 ++++---- index.html | 8 ++++---- inter-repository-dependencies/index.html | 8 ++++---- migration-guide/index.html | 8 ++++---- msk-maintenance/index.html | 8 ++++---- .../index.html | 8 ++++---- news-genie/index.html | 8 ++++---- news/index.html | 8 ++++---- resources/js/config.js | 2 +- rfc-list/index.html | 8 ++++---- session-service-management/index.html | 10 +++++----- sitemap.xml.gz | Bin 1359 -> 1360 bytes software-acknowledgments/index.html | 8 ++++---- study-curation-guide/index.html | 8 ++++---- testing/index.html | 10 +++++----- uninstall-docker-cbioportal/index.html | 10 +++++----- .../index.html | 10 +++++----- .../index.html | 10 +++++----- user-guide/by-page/index.html | 8 ++++---- user-guide/faq/index.html | 8 ++++---- user-guide/index.html | 8 ++++---- user-guide/new-users/index.html | 8 ++++---- user-guide/oql/index.html | 8 ++++---- user-guide/overview/index.html | 8 ++++---- using-the-dataset-validator/index.html | 10 +++++----- using-the-metaimport-script/index.html | 8 ++++---- web-api-and-clients/index.html | 10 +++++----- z-score-normalization-script/index.html | 8 ++++---- 84 files changed, 351 insertions(+), 351 deletions(-) diff --git a/404.html b/404.html index c35ac3d5c84..9238100d173 100644 --- a/404.html +++ b/404.html @@ -3,7 +3,7 @@ - + @@ -28,11 +28,11 @@ - + - + - + diff --git a/about-us/index.html b/about-us/index.html index b08293c3cbd..8a74ff0ffcf 100644 --- a/about-us/index.html +++ b/about-us/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/architecture-overview/index.html b/architecture-overview/index.html index fbeca53ac5d..42cf49deb97 100644 --- a/architecture-overview/index.html +++ b/architecture-overview/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/backend-code-organization/index.html b/backend-code-organization/index.html index d3c104aefba..17850581ec4 100644 --- a/backend-code-organization/index.html +++ b/backend-code-organization/index.html @@ -3,7 +3,7 @@ - + @@ -33,11 +33,11 @@ - + - + - + diff --git a/backend-development-guidelines/index.html b/backend-development-guidelines/index.html index 219d3582326..8171aa4352a 100644 --- a/backend-development-guidelines/index.html +++ b/backend-development-guidelines/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/create-and-publish-virtual-study/index.html b/create-and-publish-virtual-study/index.html index 3a2cb13bfb5..bf35a7b196f 100644 --- a/create-and-publish-virtual-study/index.html +++ b/create-and-publish-virtual-study/index.html @@ -3,7 +3,7 @@ - + @@ -31,12 +31,12 @@ - + - + - - + + diff --git a/data-loading-for-developers/index.html b/data-loading-for-developers/index.html index b604c7ddaad..9e43598c5d6 100644 --- a/data-loading-for-developers/index.html +++ b/data-loading-for-developers/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/data-loading-maintaining-studies/index.html b/data-loading-maintaining-studies/index.html index 66ada7d8d7c..f2bdf620cc3 100644 --- a/data-loading-maintaining-studies/index.html +++ b/data-loading-maintaining-studies/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/data-loading-tips-and-best-practices/index.html b/data-loading-tips-and-best-practices/index.html index c660a21736d..5ead52a900b 100644 --- a/data-loading-tips-and-best-practices/index.html +++ b/data-loading-tips-and-best-practices/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/data-loading/index.html b/data-loading/index.html index cd6339b3a04..f85c3005879 100644 --- a/data-loading/index.html +++ b/data-loading/index.html @@ -3,7 +3,7 @@ - + @@ -31,12 +31,12 @@ - + - + - - + + diff --git a/deployment/authorization-and-authentication/authenticating-and-authorizing-users-via-keycloak/index.html b/deployment/authorization-and-authentication/authenticating-and-authorizing-users-via-keycloak/index.html index 0843a909973..e58996588a1 100644 --- a/deployment/authorization-and-authentication/authenticating-and-authorizing-users-via-keycloak/index.html +++ b/deployment/authorization-and-authentication/authenticating-and-authorizing-users-via-keycloak/index.html @@ -3,7 +3,7 @@ - + @@ -33,12 +33,12 @@ - + - + - - + + diff --git a/deployment/authorization-and-authentication/authenticating-users-via-ldap/index.html b/deployment/authorization-and-authentication/authenticating-users-via-ldap/index.html index 11cedb05706..f9b45ac22a4 100644 --- a/deployment/authorization-and-authentication/authenticating-users-via-ldap/index.html +++ b/deployment/authorization-and-authentication/authenticating-users-via-ldap/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/deployment/authorization-and-authentication/authenticating-users-via-saml/index.html b/deployment/authorization-and-authentication/authenticating-users-via-saml/index.html index fe501dd4e89..ee2d51fb432 100644 --- a/deployment/authorization-and-authentication/authenticating-users-via-saml/index.html +++ b/deployment/authorization-and-authentication/authenticating-users-via-saml/index.html @@ -3,7 +3,7 @@ - + @@ -33,11 +33,11 @@ - + - + - + diff --git a/deployment/authorization-and-authentication/authenticating-users-via-tokens/index.html b/deployment/authorization-and-authentication/authenticating-users-via-tokens/index.html index 8fcd16ff591..1f70a7d2ce6 100644 --- a/deployment/authorization-and-authentication/authenticating-users-via-tokens/index.html +++ b/deployment/authorization-and-authentication/authenticating-users-via-tokens/index.html @@ -3,7 +3,7 @@ - + @@ -33,11 +33,11 @@ - + - + - + diff --git a/deployment/authorization-and-authentication/user-authorization/index.html b/deployment/authorization-and-authentication/user-authorization/index.html index 1e993f9dcc9..2f30267bba0 100644 --- a/deployment/authorization-and-authentication/user-authorization/index.html +++ b/deployment/authorization-and-authentication/user-authorization/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/deployment/customization/application.properties-reference/index.html b/deployment/customization/application.properties-reference/index.html index 2d8b5b34893..6a739fa1cc9 100644 --- a/deployment/customization/application.properties-reference/index.html +++ b/deployment/customization/application.properties-reference/index.html @@ -3,7 +3,7 @@ - + @@ -33,12 +33,12 @@ - + - + - - + + diff --git a/deployment/customization/caching/index.html b/deployment/customization/caching/index.html index 11034ce3a47..3b6d25476c5 100644 --- a/deployment/customization/caching/index.html +++ b/deployment/customization/caching/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/deployment/customization/customizing-your-instance-of-cbioportal/index.html b/deployment/customization/customizing-your-instance-of-cbioportal/index.html index bf0a782cd93..88491d4918a 100644 --- a/deployment/customization/customizing-your-instance-of-cbioportal/index.html +++ b/deployment/customization/customizing-your-instance-of-cbioportal/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/deployment/customization/download_custom_buttons-reference/index.html b/deployment/customization/download_custom_buttons-reference/index.html index a0f2c023259..38c736128b6 100644 --- a/deployment/customization/download_custom_buttons-reference/index.html +++ b/deployment/customization/download_custom_buttons-reference/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/deployment/customization/portal.properties--reference/index.html b/deployment/customization/portal.properties--reference/index.html index 96b8fcf9340..e2bb6c39dbc 100644 --- a/deployment/customization/portal.properties--reference/index.html +++ b/deployment/customization/portal.properties--reference/index.html @@ -3,7 +3,7 @@ - + @@ -11,7 +11,7 @@ portal.properties Reference - + @@ -20,22 +20,22 @@ - + - + - + - + - + @@ -242,7 +242,7 @@

portal.properties Reference

-

This file has been depreciated and information about customizing cBioPortal can be found in application.properties documentation.

+

This file has been deprecated and information about customizing cBioPortal can be found in application.properties documentation.

diff --git a/deployment/customization/security.properties-reference/index.html b/deployment/customization/security.properties-reference/index.html index 2bdcdd546ab..666cf161968 100644 --- a/deployment/customization/security.properties-reference/index.html +++ b/deployment/customization/security.properties-reference/index.html @@ -3,7 +3,7 @@ - + @@ -31,12 +31,12 @@ - + - + - - + + diff --git a/deployment/customization/studyview/index.html b/deployment/customization/studyview/index.html index 97e7421d1aa..e04cbb81443 100644 --- a/deployment/customization/studyview/index.html +++ b/deployment/customization/studyview/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/deployment/deploy-without-docker/build-from-source/index.html b/deployment/deploy-without-docker/build-from-source/index.html index 7e39e68db2c..bdde06ce052 100644 --- a/deployment/deploy-without-docker/build-from-source/index.html +++ b/deployment/deploy-without-docker/build-from-source/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/deployment/deploy-without-docker/deploying/index.html b/deployment/deploy-without-docker/deploying/index.html index cd12d65b163..47c4ce3e129 100644 --- a/deployment/deploy-without-docker/deploying/index.html +++ b/deployment/deploy-without-docker/deploying/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/deployment/deploy-without-docker/import-the-seed-database/index.html b/deployment/deploy-without-docker/import-the-seed-database/index.html index cdb2c496867..49c8fc0b725 100644 --- a/deployment/deploy-without-docker/import-the-seed-database/index.html +++ b/deployment/deploy-without-docker/import-the-seed-database/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/deployment/deploy-without-docker/load-sample-cancer-study/index.html b/deployment/deploy-without-docker/load-sample-cancer-study/index.html index 0f110a2c783..977d920c94b 100644 --- a/deployment/deploy-without-docker/load-sample-cancer-study/index.html +++ b/deployment/deploy-without-docker/load-sample-cancer-study/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/deployment/deploy-without-docker/pre-build-steps/index.html b/deployment/deploy-without-docker/pre-build-steps/index.html index 891c6dd6c3b..9129dd5d222 100644 --- a/deployment/deploy-without-docker/pre-build-steps/index.html +++ b/deployment/deploy-without-docker/pre-build-steps/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/deployment/deploy-without-docker/software-requirements/index.html b/deployment/deploy-without-docker/software-requirements/index.html index 6913d581068..0e2b92813bd 100644 --- a/deployment/deploy-without-docker/software-requirements/index.html +++ b/deployment/deploy-without-docker/software-requirements/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/deployment/docker/example_commands/index.html b/deployment/docker/example_commands/index.html index f43c728c8c1..56e7b4feea2 100644 --- a/deployment/docker/example_commands/index.html +++ b/deployment/docker/example_commands/index.html @@ -3,7 +3,7 @@ - + @@ -31,12 +31,12 @@ - + - + - - + + diff --git a/deployment/docker/import_data/index.html b/deployment/docker/import_data/index.html index 58a5eeb800d..cf1d2349348 100644 --- a/deployment/docker/import_data/index.html +++ b/deployment/docker/import_data/index.html @@ -3,7 +3,7 @@ - + @@ -31,12 +31,12 @@ - + - + - - + + diff --git a/deployment/docker/index.html b/deployment/docker/index.html index ba1777d7436..e3ab9b27dba 100644 --- a/deployment/docker/index.html +++ b/deployment/docker/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/deployment/docker/notes-for-non-linux/index.html b/deployment/docker/notes-for-non-linux/index.html index 1cefbe8a114..f368cca9ccf 100644 --- a/deployment/docker/notes-for-non-linux/index.html +++ b/deployment/docker/notes-for-non-linux/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/deployment/docker/using-keycloak/index.html b/deployment/docker/using-keycloak/index.html index 8b6d3f02f92..3a4f525f1a5 100644 --- a/deployment/docker/using-keycloak/index.html +++ b/deployment/docker/using-keycloak/index.html @@ -3,7 +3,7 @@ - + @@ -31,12 +31,12 @@ - + - + - - + + diff --git a/deployment/index.html b/deployment/index.html index b04e2ee1733..1b352577428 100644 --- a/deployment/index.html +++ b/deployment/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/deployment/integration-with-other-webservices/index.html b/deployment/integration-with-other-webservices/index.html index 9b50b82075b..073953bdd8d 100644 --- a/deployment/integration-with-other-webservices/index.html +++ b/deployment/integration-with-other-webservices/index.html @@ -3,7 +3,7 @@ - + @@ -28,11 +28,11 @@ - + - + - + diff --git a/deployment/integration-with-other-webservices/oncokb-data-access/index.html b/deployment/integration-with-other-webservices/oncokb-data-access/index.html index ddb2413d9e7..30985ecab22 100644 --- a/deployment/integration-with-other-webservices/oncokb-data-access/index.html +++ b/deployment/integration-with-other-webservices/oncokb-data-access/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/development/build-different-frontend/index.html b/development/build-different-frontend/index.html index 0460fb01866..244676de364 100644 --- a/development/build-different-frontend/index.html +++ b/development/build-different-frontend/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/development/cbioportal-er-diagram/index.html b/development/cbioportal-er-diagram/index.html index 6a1a67464a6..a5b01a3c985 100644 --- a/development/cbioportal-er-diagram/index.html +++ b/development/cbioportal-er-diagram/index.html @@ -3,7 +3,7 @@ - + @@ -33,11 +33,11 @@ - + - + - + diff --git a/development/database-versioning/index.html b/development/database-versioning/index.html index 14a8374d50c..1f9f8284201 100644 --- a/development/database-versioning/index.html +++ b/development/database-versioning/index.html @@ -3,7 +3,7 @@ - + @@ -31,12 +31,12 @@ - + - + - - + + diff --git a/development/deployment-procedure/index.html b/development/deployment-procedure/index.html index 97ec21ef5a3..7872ce2da38 100644 --- a/development/deployment-procedure/index.html +++ b/development/deployment-procedure/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/development/documentation-site/index.html b/development/documentation-site/index.html index 91f512a8e2c..adf71549456 100644 --- a/development/documentation-site/index.html +++ b/development/documentation-site/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/development/feature-development-guide/index.html b/development/feature-development-guide/index.html index 2519e946483..5134fb31f42 100644 --- a/development/feature-development-guide/index.html +++ b/development/feature-development-guide/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/development/index.html b/development/index.html index 0f75d0afc14..9335fd3e873 100644 --- a/development/index.html +++ b/development/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/development/manual-test-cases/index.html b/development/manual-test-cases/index.html index abc3e61d8a4..bc88225020b 100644 --- a/development/manual-test-cases/index.html +++ b/development/manual-test-cases/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/development/release-procedure/index.html b/development/release-procedure/index.html index d7257cd5a0b..e22b4d46fc6 100644 --- a/development/release-procedure/index.html +++ b/development/release-procedure/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/development/session-service-working/index.html b/development/session-service-working/index.html index 33a898fe06a..e7303797654 100644 --- a/development/session-service-working/index.html +++ b/development/session-service-working/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/downloads/index.html b/downloads/index.html index 956bfd46932..d3092bcceea 100644 --- a/downloads/index.html +++ b/downloads/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git a/file-formats/index.html b/file-formats/index.html index a09bbd19fcc..9446af6b4d8 100644 --- a/file-formats/index.html +++ b/file-formats/index.html @@ -3,7 +3,7 @@ - + @@ -33,12 +33,12 @@ - + - + - - + + diff --git a/hardware-requirements/index.html b/hardware-requirements/index.html index 56f5b1f535f..bb75e33630a 100644 --- a/hardware-requirements/index.html +++ b/hardware-requirements/index.html @@ -3,7 +3,7 @@ - + @@ -31,11 +31,11 @@ - + - + - + diff --git 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