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simTree_color.tre
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#NEXUS
begin taxa;
dimensions ntax=79;
taxlabels
genusA_sp01_ortholog[&!color=#0000ff]
genusA_sp02_ortholog[&!color=#0000ff]
genusA_sp03_ortholog[&!color=#0000ff]
genusA_sp04_ortholog[&!color=#0000ff]
genusA_sp05_ortholog[&!color=#0000ff]
genusA_sp06_ortholog[&!color=#0000ff]
genusC_sp01_hgt4[&!color=#ff66ff]
genusB_sp01_longbranch[&!color=#808000]
genusB_sp01_longerbranch[&!color=#808000]
genusB_sp01_ortholog[&!color=#008000]
genusB_sp01_paralog1[&!color=#008080]
genusB_sp01_paralog2[&!color=#008080]
genusB_sp02_longbranch[&!color=#808000]
genusB_sp02_longerbranch[&!color=#808000]
genusB_sp02_ortholog[&!color=#008000]
genusB_sp02_paralog1[&!color=#008080]
genusB_sp02_paralog2[&!color=#008080]
genusB_sp03_longbranch[&!color=#808000]
genusB_sp03_longerbranch[&!color=#808000]
genusB_sp03_ortholog[&!color=#008000]
genusB_sp03_paralog1[&!color=#008080]
genusB_sp03_paralog2[&!color=#008080]
genusB_sp04_longbranch[&!color=#808000]
genusB_sp04_longerbranch[&!color=#808000]
genusB_sp04_ortholog[&!color=#008000]
genusB_sp04_paralog1[&!color=#008080]
genusB_sp04_paralog2[&!color=#008080]
genusB_sp05_longbranch[&!color=#808000]
genusB_sp05_longerbranch[&!color=#808000]
genusB_sp05_ortholog[&!color=#008000]
genusB_sp05_paralog1[&!color=#008080]
genusB_sp05_paralog2[&!color=#008080]
genusB_sp06_longbranch[&!color=#808000]
genusB_sp06_longerbranch[&!color=#808000]
genusB_sp06_ortholog[&!color=#008000]
genusB_sp06_paralog1[&!color=#008080]
genusB_sp06_paralog2[&!color=#008080]
genusC_sp01_hg1[&!color=#ff66ff]
genusC_sp01_hg2[&!color=#ff66ff]
genusC_sp01_hg3[&!color=#ff66ff]
genusC_sp01_longbranch[&!color=#ff6666]
genusC_sp01_longerbranch[&!color=#ff6666]
genusC_sp01_ortholog[&!color=#ff0000]
genusC_sp02_hg1[&!color=#ff66ff]
genusC_sp02_hg2[&!color=#ff66ff]
genusC_sp02_hg3[&!color=#ff66ff]
genusC_sp02_longbranch[&!color=#ff6666]
genusC_sp02_longerbranch[&!color=#ff6666]
genusC_sp02_ortholog[&!color=#ff0000]
genusC_sp03_hg1[&!color=#ff66ff]
genusC_sp03_hg2[&!color=#ff66ff]
genusC_sp03_longbranch[&!color=#ff6666]
genusC_sp03_longerbranch[&!color=#ff6666]
genusC_sp03_ortholog[&!color=#ff0000]
genusC_sp04_hg1[&!color=#ff66ff]
genusC_sp04_hg2[&!color=#ff66ff]
genusC_sp04_longbranch[&!color=#ff6666]
genusC_sp04_longerbranch[&!color=#ff6666]
genusC_sp04_ortholog[&!color=#ff0000]
genusC_sp05_hg1[&!color=#ff66ff]
genusC_sp05_longbranch[&!color=#ff6666]
genusC_sp05_longerbranch[&!color=#ff6666]
genusC_sp05_ortholog[&!color=#ff0000]
genusC_sp06_hg1[&!color=#ff66ff]
genusC_sp06_longbranch[&!color=#ff6666]
genusC_sp06_longerbranch[&!color=#ff6666]
genusC_sp06_ortholog[&!color=#ff0000]
genusZ_sp01_longerbranch
genusZ_sp01_ortholog
genusZ_sp02_longerbranch
genusZ_sp02_ortholog
genusZ_sp03_longerbranch
genusZ_sp03_ortholog
genusZ_sp04_longerbranch
genusZ_sp04_ortholog
genusZ_sp05_longerbranch
genusZ_sp05_ortholog
genusZ_sp06_longerbranch
genusZ_sp06_ortholog
;
end;
begin trees;
tree tree_1 = [&R] ((((((((genusA_sp01_ortholog:0.2,genusA_sp02_ortholog:0.15):0.2,(genusA_sp03_ortholog:0.2,genusA_sp04_ortholog:0.15):0.15):0.2,(genusA_sp05_ortholog:0.2,genusA_sp06_ortholog:0.15):0.2):0.2,((((((((genusB_sp01_ortholog:0.04,genusC_sp01_hgt4:0.04):0.16,genusB_sp02_ortholog:0.15):0.04,(genusC_sp01_hg3:0.2,genusC_sp02_hg3:0.15):0.04):0.16,(genusB_sp03_ortholog:0.2,genusB_sp04_ortholog:0.15):0.15):0.04,((genusC_sp01_hg2:0.2,genusC_sp02_hg2:0.15):0.2,(genusC_sp03_hg2:0.2,genusC_sp04_hg2:0.15):0.15):0.04):0.16,(genusB_sp05_ortholog:0.2,genusB_sp06_ortholog:0.15):0.2):0.04,(((genusC_sp01_hg1:0.2,genusC_sp02_hg1:0.15):0.2,(genusC_sp03_hg1:0.2,genusC_sp04_hg1:0.15):0.15):0.2,(genusC_sp05_hg1:0.2,genusC_sp06_hg1:0.15):0.2):0.04):0.12,((((genusB_sp01_longbranch:0.3,genusB_sp02_longbranch:0.23):0.3,(genusB_sp03_longbranch:0.3,genusB_sp04_longbranch:0.23):0.23):0.3,(genusB_sp05_longbranch:0.3,genusB_sp06_longbranch:0.23):0.3):0.3,(((genusB_sp01_longerbranch:0.4,genusB_sp02_longerbranch:0.3):0.4,(genusB_sp03_longerbranch:0.4,genusB_sp04_longerbranch:0.3):0.3):0.4,(genusB_sp05_longerbranch:0.4,genusB_sp06_longerbranch:0.3):0.4):0.4):0.04):0.04):0.04,((((genusC_sp01_ortholog:0.2,genusC_sp02_ortholog:0.15):0.2,(genusC_sp03_ortholog:0.2,genusC_sp04_ortholog:0.15):0.15):0.2,(genusC_sp05_ortholog:0.2,genusC_sp06_ortholog:0.15):0.2):0.12,((((genusC_sp01_longbranch:0.3,genusC_sp02_longbranch:0.23):0.3,(genusC_sp03_longbranch:0.3,genusC_sp04_longbranch:0.23):0.23):0.3,(genusC_sp05_longbranch:0.3,genusC_sp06_longbranch:0.23):0.3):0.3,(((genusC_sp01_longerbranch:0.4,genusC_sp02_longerbranch:0.3):0.4,(genusC_sp03_longerbranch:0.4,genusC_sp04_longerbranch:0.3):0.3):0.4,(genusC_sp05_longerbranch:0.4,genusC_sp06_longerbranch:0.3):0.4):0.4):0.04):0.08):0.08,(((genusB_sp01_paralog1:0.2,genusB_sp02_paralog1:0.15):0.2,(genusB_sp03_paralog1:0.2,genusB_sp04_paralog1:0.15):0.15):0.2,(genusB_sp05_paralog1:0.2,genusB_sp06_paralog1:0.15):0.2):0.2):0.08,(((genusB_sp01_paralog2:0.2,genusB_sp02_paralog2:0.15):0.2,(genusB_sp03_paralog2:0.2,genusB_sp04_paralog2:0.15):0.15):0.2,(genusB_sp05_paralog2:0.2,genusB_sp06_paralog2:0.15):0.2):0.24):0.2,((((genusZ_sp01_ortholog:0.3,genusZ_sp02_ortholog:0.23):0.3,(genusZ_sp03_ortholog:0.3,genusZ_sp04_ortholog:0.23):0.23):0.3,(genusZ_sp05_ortholog:0.3,genusZ_sp06_ortholog:0.23):0.3):0.04,(((genusZ_sp01_longerbranch:0.4,genusZ_sp02_longerbranch:0.3):0.4,(genusZ_sp03_longerbranch:0.4,genusZ_sp04_longerbranch:0.3):0.3):0.4,(genusZ_sp05_longerbranch:0.4,genusZ_sp06_longerbranch:0.3):0.4):0.04):0.36);
end;
begin figtree;
set appearance.backgroundColorAttribute="Default";
set appearance.backgroundColour=#ffffff;
set appearance.branchColorAttribute="User selection";
set appearance.branchColorGradient=false;
set appearance.branchLineWidth=1.0;
set appearance.branchMinLineWidth=0.0;
set appearance.branchWidthAttribute="Fixed";
set appearance.foregroundColour=#000000;
set appearance.hilightingGradient=false;
set appearance.selectionColour=#2d3680;
set branchLabels.colorAttribute="User selection";
set branchLabels.displayAttribute="Branch times";
set branchLabels.fontName=".AppleSystemUIFont";
set branchLabels.fontSize=8;
set branchLabels.fontStyle=0;
set branchLabels.isShown=true;
set branchLabels.significantDigits=4;
set layout.expansion=0;
set layout.layoutType="RECTILINEAR";
set layout.zoom=0;
set legend.attribute=null;
set legend.fontSize=10.0;
set legend.isShown=false;
set legend.significantDigits=4;
set nodeBars.barWidth=4.0;
set nodeBars.displayAttribute=null;
set nodeBars.isShown=false;
set nodeLabels.colorAttribute="User selection";
set nodeLabels.displayAttribute="Node ages";
set nodeLabels.fontName=".AppleSystemUIFont";
set nodeLabels.fontSize=8;
set nodeLabels.fontStyle=0;
set nodeLabels.isShown=false;
set nodeLabels.significantDigits=4;
set nodeShapeExternal.colourAttribute="User selection";
set nodeShapeExternal.isShown=false;
set nodeShapeExternal.minSize=10.0;
set nodeShapeExternal.scaleType=Width;
set nodeShapeExternal.shapeType=Circle;
set nodeShapeExternal.size=4.0;
set nodeShapeExternal.sizeAttribute="Fixed";
set nodeShapeInternal.colourAttribute="User selection";
set nodeShapeInternal.isShown=false;
set nodeShapeInternal.minSize=10.0;
set nodeShapeInternal.scaleType=Width;
set nodeShapeInternal.shapeType=Circle;
set nodeShapeInternal.size=4.0;
set nodeShapeInternal.sizeAttribute="Fixed";
set polarLayout.alignTipLabels=false;
set polarLayout.angularRange=0;
set polarLayout.rootAngle=0;
set polarLayout.rootLength=100;
set polarLayout.showRoot=true;
set radialLayout.spread=0.0;
set rectilinearLayout.alignTipLabels=false;
set rectilinearLayout.curvature=0;
set rectilinearLayout.rootLength=100;
set scale.offsetAge=0.0;
set scale.rootAge=1.0;
set scale.scaleFactor=1.0;
set scale.scaleRoot=false;
set scaleAxis.automaticScale=true;
set scaleAxis.fontSize=8.0;
set scaleAxis.isShown=false;
set scaleAxis.lineWidth=1.0;
set scaleAxis.majorTicks=1.0;
set scaleAxis.minorTicks=0.5;
set scaleAxis.origin=0.0;
set scaleAxis.reverseAxis=false;
set scaleAxis.showGrid=true;
set scaleBar.automaticScale=true;
set scaleBar.fontSize=10.0;
set scaleBar.isShown=true;
set scaleBar.lineWidth=1.0;
set scaleBar.scaleRange=0.0;
set tipLabels.colorAttribute="User selection";
set tipLabels.displayAttribute="Names";
set tipLabels.fontName=".AppleSystemUIFont";
set tipLabels.fontSize=8;
set tipLabels.fontStyle=0;
set tipLabels.isShown=true;
set tipLabels.significantDigits=4;
set trees.order=false;
set trees.orderType="increasing";
set trees.rooting=false;
set trees.rootingType="User Selection";
set trees.transform=false;
set trees.transformType="cladogram";
end;