Error pathway_errorbar "$<-.data.frame(*tmp*, "group", value = c(2L, 2L, 2L, 2L, : replacement has 20 rows, data has 1"

[raqxavier]

Good morning

I have one differentially abundant pathway between two groups and wish to plot it using the "pathway_errorbar":
p <- pathway_errorbar(abundance = kegg_abundance, daa_results_df = daa_annotated_sub_method_results_df, Group = metadata$state, p_values_threshold = 0.05, order = "pathway_class", select = NULL, ko_to_kegg = TRUE, p_value_bar = TRUE, colors = NULL, x_lab = "pathway_name")

ERROR
Error in $<-.data.frame(*tmp*, "group", value = c(2L, 2L, 2L, 2L, :
replacement has 20 rows, data has 1
In addition: Warning message:
In cbind(sample = colnames(sub_relative_abundance_mat), group = Group, :
number of rows of result is not a multiple of vector length (arg 2)

Environment Information:

• Operating System: mac
• R Version: R version 4.3.1
• Package Version: 1.7.3

[Valencia-0302]

Did you resolve this issue? I am also using R on a Mac, and while it worked last year, I'm encountering this problem now when trying to regenerate the plots this year.

[raqxavier]

I did solve it, but can't remember how and did not make notes in the script. Sorry!