pyproject.toml

[tool.ruff]
line-length = 88
preview = true # required to activate many pycodestyle errors and warnings as of 2024-03-13
builtins = ["snakemake"]
[tool.ruff.format]
quote-style = "double"
indent-style = "space"
docstring-code-format = false
line-ending = "auto"
[tool.ruff.lint]
select = [
    # pycodestyle errors
    "E",
    # pycodestyle warnings
    "W",
    # Pyflakes
    "F",
    # pyupgrade
    "UP",
    # flake8-bugbear
    "B",
    # flake8-simplify
    "SIM",
    # isort
    "I",
]
ignore = [
    # here and below, rules are redundant with formatter, see
    # https://docs.astral.sh/ruff/formatter/#conflicting-lint-rules
    "E501",
    "W191",
    "E111",
    "E114",
    "E117",
]

[tool.pytest.ini_options]
norecursedirs = [
    ".git",
    ".snakemake",
    "tests/model", # by default, don't execute tests requiring build results
]
testpaths = [
    "tests/lib",
    "tests/scripts",
]
pythonpath = [
    ".",
    "./scripts"
]