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support for irods: protocol #53

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mgcam opened this issue Feb 6, 2020 · 0 comments
Open

support for irods: protocol #53

mgcam opened this issue Feb 6, 2020 · 0 comments

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@mgcam
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mgcam commented Feb 6, 2020

bam_stats is unable to read files in iRODS in the presence of iRODS libhts plugin since the check for the file existence in the beginning of the program does not understand irods: protocol. It might be better to leave htslib to figure our whether it can retrieve the file.

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