-
Notifications
You must be signed in to change notification settings - Fork 7
/
prerelease.sh
executable file
·93 lines (76 loc) · 2.96 KB
/
prerelease.sh
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
#!/bin/bash
##########LICENCE##########
# Copyright (c) 2014 Genome Research Ltd.
#
# Author: Cancer Genome Project [email protected]
#
# This file is part of VAGrENT.
#
# VAGrENT is free software: you can redistribute it and/or modify it under
# the terms of the GNU Affero General Public License as published by the Free
# Software Foundation; either version 3 of the License, or (at your option) any
# later version.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more
# details.
#
# You should have received a copy of the GNU Affero General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
##########LICENCE##########
set -eu # exit on first error or undefined value in subtitution
# get current directory
INIT_DIR=`pwd`
if [ "$#" -ne "1" ] ; then
echo "Please provide the installation path"
exit 1
fi
# Installation path from setup.sh
INST_PATH=$1
# make sure tools installed can see the install loc of libraries
set +u
export PATH=`echo $INST_PATH/bin:$PATH | perl -pe 's/:\$//;'`
export PERL5LIB=`echo $INST_PATH/lib/perl5:$PERL5LIB | perl -pe 's/:\$//;'`
set -u
rm -rf blib
# get location of this file
MY_PATH="`dirname \"$0\"`" # relative
MY_PATH="`( cd \"$MY_PATH\" && pwd )`" # absolutized and normalized
if [ -z "$MY_PATH" ] ; then
# error; for some reason, the path is not accessible
# to the script (e.g. permissions re-evaled after suid)
echo Failed to determine location of script >2
exit 1 # fail
fi
# change into the location of the script
cd $MY_PATH
echo '########## Running perl tests ##########'
export HARNESS_PERL_SWITCHES=-MDevel::Cover=-db,reports,-select='^lib/*\.pm$',-ignore,'^t/'
rm -rf docs
mkdir -p docs/reports_text
prove -j 4 -w -I lib t
echo '### Generating test/pod coverage reports ###'
# removed 'condition' from coverage as '||' 'or' doesn't work properly
cover -coverage branch,subroutine,pod -report_c0 50 -report_c1 85 -report_c2 100 -report html_basic reports -silent
cover -coverage branch,subroutine,pod -report text reports -silent > docs/reports_text/coverage.txt
rm -rf reports/structure reports/digests reports/cover.13 reports/runs
cp reports/coverage.html reports/index.html
mv reports docs/reports_html
unset HARNESS_PERL_SWITCHES
echo '### Generating POD ###'
mkdir -p docs/pod_html
perl -MPod::Simple::HTMLBatch -e 'Pod::Simple::HTMLBatch::go' lib:bin docs/pod_html > /dev/null
echo '### Archiving docs folder ###'
tar cz -C $INIT_DIR -f docs.tar.gz docs
# generate manifest, and cleanup
echo '### Generating MANIFEST ###'
# delete incase any files are moved, the make target just adds stuff
rm -f MANIFEST
# cleanup things which could break the manifest
rm -rf install_tmp
perl Makefile.PL > /dev/null
make manifest >& /dev/null
rm -f Makefile MANIFEST.bak pm_to_blib
# change back to original dir
cd $INIT_DIR