From 007faddc07ab7b2b8d7e4ec7fca5c0ba67a32ae7 Mon Sep 17 00:00:00 2001 From: Shriram Bhosle Date: Fri, 10 Jul 2020 08:34:04 +0100 Subject: [PATCH] updated README, removed requirements.txt --- README.md | 13 ++++++++----- 1 file changed, 8 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 57a0c8a..b0402a2 100644 --- a/README.md +++ b/README.md @@ -24,7 +24,8 @@ This project hosts scripts to annotate VCF files using user defined driver genes ## Design -Uses [bcftools] and tabix from htslib + +Uses [bcftools], [tabix] and [bgzip] in user's path , these are part of [htslib] or can be installed separately ## Tools @@ -132,9 +133,11 @@ pip install --find-links=~/wheels annotateVcf ### Reference - [bcftools]: http://samtools.github.io/bcftools/bcftools.html + [htslib]: https://github.com/samtools/htslib + [bcftools]: https://github.com/samtools/bcftools + [tabix]: https://github.com/samtools/tabix [VAGrENT]: https://github.com/cancerit/VAGrENT - [travis-master-badge]: https://travis-ci.org/cancerit/annotateVcf.svg?branch=master - [travis-develop-badge]: https://travis-ci.org/cancerit/annotateVcf.svg?branch=develop + [travis-master-badge]: https://travis-ci.org/cancerit/annotateVCF.svg?branch=master + [travis-develop-badge]: https://travis-ci.org/cancerit/annotateVCF.svg?branch=develop [travis-repo]: https://travis-ci.org/cancerit/annotateVcf - [annotateVcf-releases]: https://github.com/cancerit/annotateVcf/releases + [annotateVcf-releases]: https://github.com/cancerit/annotateVCF/releases