From 49ce9262e928c37f0a0f83fd54c385beef856b66 Mon Sep 17 00:00:00 2001
From: David Jones <drj@sanger.ac.uk>
Date: Mon, 9 Dec 2019 14:10:33 +0000
Subject: [PATCH 1/3] Update CHANGES and version numbers in perl module

---
 CHANGES.md                | 4 ++++
 lib/Sanger/CGP/Caveman.pm | 2 +-
 2 files changed, 5 insertions(+), 1 deletion(-)

diff --git a/CHANGES.md b/CHANGES.md
index 5b832d0..1fb2604 100644
--- a/CHANGES.md
+++ b/CHANGES.md
@@ -1,5 +1,9 @@
 # CHANGES
 
+## 1.15.3
+
+* Build around CaVEMan core [1.14.1](https://github.com/cancerit/CaVEMan/releases/tag/1.14.0)
+
 ## 1.15.2
 
 * Upgrade to cgpCavEMAnPostProcessing [1.8.9](https://github.com/cancerit/cgpCaVEManPostProcessing/releases/tag/1.8.9)
diff --git a/lib/Sanger/CGP/Caveman.pm b/lib/Sanger/CGP/Caveman.pm
index 0846826..a621e66 100644
--- a/lib/Sanger/CGP/Caveman.pm
+++ b/lib/Sanger/CGP/Caveman.pm
@@ -26,6 +26,6 @@ package Sanger::CGP::Caveman;
 use strict;
 use Const::Fast qw(const);
 
-our $VERSION = '1.15.2';
+our $VERSION = '1.15.3';
 
 1;

From 5bd7126d9d22ae1d04ff0cc01dab408d02e5222f Mon Sep 17 00:00:00 2001
From: David Jones <drj@sanger.ac.uk>
Date: Mon, 9 Dec 2019 14:21:04 +0000
Subject: [PATCH 2/3] Update to use CaVEMan core 1.14.1

---
 Dockerfile | 4 ++--
 setup.sh   | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index b1dc958..a893b0f 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -5,10 +5,10 @@ USER  root
 # ALL tool versions used by opt-build.sh
 ENV VER_VCFTOOLS="0.1.16"
 ENV VER_CGPVCF="v2.2.1"
-ENV VER_CAVEMAN="1.14.0"
+ENV VER_CAVEMAN="1.14.1"
 ENV VER_BEDTOOLS="2.27.1"
 ENV VER_CGPCAVEPOSTPROC="1.8.9"
-ENV VER_CGPCAVEWRAP="1.15.0"
+ENV VER_CGPCAVEWRAP="1.15.3"
 
 RUN apt-get -yq update
 RUN apt-get install -yq --no-install-recommends \
diff --git a/setup.sh b/setup.sh
index a71f72e..1ff74a0 100755
--- a/setup.sh
+++ b/setup.sh
@@ -21,7 +21,7 @@
 #  along with this program. If not, see <http://www.gnu.org/licenses/>.
 ##########LICENCE##########
 
-CAVEMAN_CORE="https://github.com/cancerit/CaVEMan/archive/1.14.0.tar.gz"
+CAVEMAN_CORE="https://github.com/cancerit/CaVEMan/archive/1.14.1.tar.gz"
 
 get_distro () {
   if hash curl 2>/dev/null; then

From e46446c12f50c7d2a0987f690e5c4482dc3e7b42 Mon Sep 17 00:00:00 2001
From: David Jones <drj@sanger.ac.uk>
Date: Mon, 9 Dec 2019 14:54:45 +0000
Subject: [PATCH 3/3] Add missed version change in Dockerfile

---
 Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Dockerfile b/Dockerfile
index a893b0f..8a0d974 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -43,7 +43,7 @@ FROM ubuntu:16.04
 
 LABEL maintainer="cgphelp@sanger.ac.uk" \
       uk.ac.sanger.cgp="Cancer, Ageing and Somatic Mutation, Wellcome Trust Sanger Institute" \
-      version="1.15.2" \
+      version="1.15.3" \
       description="cgpCaVEManWrapper docker"
 
 RUN apt-get -yq update