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Retrive softclipped reads #70

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sb43 opened this issue Jan 11, 2021 · 0 comments

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sb43 commented Jan 11, 2021

vafcorrect will miss the reads where read has only soft-clipped bases within the 'region' considered for overlapping read retrieval.

Possible fix is to extend 'region' boundaries:

vafCorrect/perl/lib/Sanger/CGP/Vaf/Process/Variant.pm

Line 572 in 22b2b33

sub _fetch_features {

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