From c7d389727686420996f20b3ee106348a8536f7d4 Mon Sep 17 00:00:00 2001
From: Kori Kuzma <korikuzma@gmail.com>
Date: Mon, 7 Oct 2024 09:54:47 -0400
Subject: [PATCH 1/2] refactor: use consistent labeling for coordinate system

---
 .../TemplatedSequenceElementInput.tsx                       | 6 ++++--
 .../Input/TxSegmentElementInput/TxSegmentElementInput.tsx   | 6 ++++--
 2 files changed, 8 insertions(+), 4 deletions(-)

diff --git a/client/src/components/Pages/Structure/Input/TemplatedSequenceElementInput/TemplatedSequenceElementInput.tsx b/client/src/components/Pages/Structure/Input/TemplatedSequenceElementInput/TemplatedSequenceElementInput.tsx
index b4ef0f3..58263a0 100644
--- a/client/src/components/Pages/Structure/Input/TemplatedSequenceElementInput/TemplatedSequenceElementInput.tsx
+++ b/client/src/components/Pages/Structure/Input/TemplatedSequenceElementInput/TemplatedSequenceElementInput.tsx
@@ -137,7 +137,8 @@ const TemplatedSequenceElementInput: React.FC<
           placement="bottom"
           title={
             <Typography>
-              The starting genomic position of the segment. Inter-residue.
+              The starting genomic position (inter-residue) of the transcript
+              segment.
             </Typography>
           }
         >
@@ -154,7 +155,8 @@ const TemplatedSequenceElementInput: React.FC<
           placement="bottom"
           title={
             <Typography>
-              The ending genomic position of the segment. Inter-residue.
+              The ending genomic position (inter-residue) of the transcript
+              segment.
             </Typography>
           }
         >
diff --git a/client/src/components/Pages/Structure/Input/TxSegmentElementInput/TxSegmentElementInput.tsx b/client/src/components/Pages/Structure/Input/TxSegmentElementInput/TxSegmentElementInput.tsx
index 613b854..ebff92e 100644
--- a/client/src/components/Pages/Structure/Input/TxSegmentElementInput/TxSegmentElementInput.tsx
+++ b/client/src/components/Pages/Structure/Input/TxSegmentElementInput/TxSegmentElementInput.tsx
@@ -333,7 +333,8 @@ const TxSegmentCompInput: React.FC<TxSegmentElementInputProps> = ({
         placement="bottom"
         title={
           <Typography>
-            The starting genomic position of the segment. Inter-residue.
+            The starting genomic position (inter-residue) of the transcript
+            segment.
           </Typography>
         }
       >
@@ -361,7 +362,8 @@ const TxSegmentCompInput: React.FC<TxSegmentElementInputProps> = ({
         placement="bottom"
         title={
           <Typography>
-            The ending genomic position of the segment. Inter-residue.
+            The ending genomic position (inter-residue) of the transcript
+            segment.
           </Typography>
         }
       >

From 9d56950d1ceffc7a25aaab93e65b8c4225a260d0 Mon Sep 17 00:00:00 2001
From: Kori Kuzma <korikuzma@gmail.com>
Date: Mon, 7 Oct 2024 13:51:11 -0400
Subject: [PATCH 2/2] remove transcript in templated sequence input

---
 .../TemplatedSequenceElementInput.tsx                       | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/client/src/components/Pages/Structure/Input/TemplatedSequenceElementInput/TemplatedSequenceElementInput.tsx b/client/src/components/Pages/Structure/Input/TemplatedSequenceElementInput/TemplatedSequenceElementInput.tsx
index 58263a0..435e780 100644
--- a/client/src/components/Pages/Structure/Input/TemplatedSequenceElementInput/TemplatedSequenceElementInput.tsx
+++ b/client/src/components/Pages/Structure/Input/TemplatedSequenceElementInput/TemplatedSequenceElementInput.tsx
@@ -137,8 +137,7 @@ const TemplatedSequenceElementInput: React.FC<
           placement="bottom"
           title={
             <Typography>
-              The starting genomic position (inter-residue) of the transcript
-              segment.
+              The starting genomic position (inter-residue) of the segment.
             </Typography>
           }
         >
@@ -155,8 +154,7 @@ const TemplatedSequenceElementInput: React.FC<
           placement="bottom"
           title={
             <Typography>
-              The ending genomic position (inter-residue) of the transcript
-              segment.
+              The ending genomic position (inter-residue) of the segment.
             </Typography>
           }
         >