diff --git a/src/fusor/examples/tpm3_ntrk1.json b/src/fusor/examples/tpm3_ntrk1.json index 8f65f10..f464e49 100644 --- a/src/fusor/examples/tpm3_ntrk1.json +++ b/src/fusor/examples/tpm3_ntrk1.json @@ -6,62 +6,40 @@ "transcript": "refseq:NM_152263.3", "exon_end": 8, "exon_end_offset": 0, - "gene_descriptor": { + "gene": { "id": "normalize.gene:TPM3", - "type": "GeneDescriptor", + "type": "Gene", "label": "TPM3", "gene_id": "hgnc:12012" }, "element_genomic_end": { - "id": "fusor.location_descriptor:NC_000001.11", - "type": "LocationDescriptor", - "label": "NC_000001.11", - "location": { "type": "SequenceLocation", - "sequence_id": "refseq:NC_000001.11", - "interval": { - "type": "SequenceInterval", - "start": { - "type": "Number", - "value": 154170399 - }, - "end": { - "type": "Number", - "value": 154170400 - } + "sequenceReference": { + "type": "SequenceReference", + "refgetAccession": "SQ.Ya6Rs7DHhDeg7YaOSg1EoNi3U_nQ9SvO", + "residueAlphabet": null, + "start": 154170399 } } - } }, { "type": "TranscriptSegmentElement", "transcript": "refseq:NM_002529.3", "exon_start": 10, "exon_start_offset": 0, - "gene_descriptor": { + "gene": { "id": "normalize.gene:NTRK1", - "type": "GeneDescriptor", + "type": "Gene", "label": "NTRK1", "gene_id": "hgnc:8031" }, "element_genomic_start": { - "id": "fusor.location_descriptor:NC_000001.11", - "type": "LocationDescriptor", - "label": "NC_000001.11", - "location": { - "type": "SequenceLocation", - "sequence_id": "refseq:NC_000001.11", - "interval": { - "type": "SequenceInterval", - "start": { - "type": "Number", - "value": 156874626 - }, - "end": { - "type": "Number", - "value": 156874627 - } - } + "type": "SequenceLocation", + "sequenceReference": { + "type": "SequenceReference", + "refgetAccession": "SQ.Ya6Rs7DHhDeg7YaOSg1EoNi3U_nQ9SvO", + "residueAlphabet": null, + "start": 156874626 } } }