No such keg: /opt/homebrew/Cellar/r

The following actions uses node12 which is deprecated and will be forced to run on node16: r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/macosx/big-sur-arm64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/macosx/big-sur-arm64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/macosx/big-sur-arm64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/macosx/big-sur-arm64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/macosx/big-sur-arm64/contrib/4.4:

r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.

/Users/runner/work/CNAqc/CNAqc/man/plot_SBS.Rd:14: unexpected section header '\value'

/Users/runner/work/CNAqc/CNAqc/man/plot_SBS.Rd:17: unexpected section header '\description'

/Users/runner/work/CNAqc/CNAqc/man/plot_SBS.Rd:24: unexpected section header '\examples'

/Users/runner/work/CNAqc/CNAqc/man/plot_SBS.Rd:33: unexpected END_OF_INPUT '

pkg-config 0.29.2_3 is already installed and up-to-date. To reinstall 0.29.2_3, run: brew reinstall pkg-config