diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index 6c00b63a..aa2536a8 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -46,8 +46,8 @@ and to meet some of our community members.
 ## Where to Contribute
 
 1.  If you wish to change this lesson,
-    please work in <https://github.com/swcarpentry/shell-novice>,
-    which can be viewed at <https://swcarpentry.github.io/shell-novice>.
+    please work in <https://github.com/carpentries-incubator/bioc-rnaseq>,
+    which can be viewed at <https://carpentries-incubator.github.io/bioc-rnaseq/>.
 
 2.  If you wish to change the example lesson,
     please work in <https://github.com/carpentries/lesson-example>,
@@ -144,8 +144,8 @@ You can also [reach us by email][contact].
 [github-flow]: https://guides.github.com/introduction/flow/
 [github-join]: https://github.com/join
 [how-contribute]: https://egghead.io/series/how-to-contribute-to-an-open-source-project-on-github
-[issues]: https://github.com/swcarpentry/shell-novice/issues/
-[repo]: https://github.com/swcarpentry/shell-novice/
+[issues]: https://github.com/carpentries-incubator/bioc-rnaseq/issues/
+[repo]: https://github.com/carpentries-incubator/bioc-rnaseq/
 [swc-issues]: https://github.com/issues?q=user%3Aswcarpentry
 [swc-lessons]: https://software-carpentry.org/lessons/
 [swc-site]: https://software-carpentry.org/
diff --git a/README.md b/README.md
index 503a32f2..a70bba52 100644
--- a/README.md
+++ b/README.md
@@ -11,7 +11,7 @@ We'd like to ask you to familiarize yourself with our [Contribution Guide](CONTR
 the [more detailed guidelines][lesson-example] on proper formatting, ways to render the lesson locally, and even
 how to write new episodes.
 
-Please see the current list of [issues][FIXME] for ideas for contributing to this
+Please see the current list of [issues][issues] for ideas for contributing to this
 repository. For making your contribution, we use the GitHub flow, which is
 nicely explained in the chapter [Contributing to a Project](http://git-scm.com/book/en/v2/GitHub-Contributing-to-a-Project) in Pro Git
 by Scott Chacon.
@@ -44,6 +44,7 @@ To cite this lesson, please consult with [CITATION](CITATION)
 
 [lesson-example]: https://carpentries.github.io/lesson-example
 [cdh]: https://cdh.carpentries.org
+[issues]: https://github.com/carpentries-incubator/bioc-rnaseq/issues/