From bb9411959ee8a986a8c64418c01f2daa4f156140 Mon Sep 17 00:00:00 2001
From: Michael Milton <michael.r.milton@gmail.com>
Date: Fri, 13 Dec 2024 14:56:52 +1100
Subject: [PATCH] Run Slurm in the CI

---
 .github/workflows/README.md             |  8 ++++----
 .github/workflows/sandpaper-main.yaml   | 11 +++++++++++
 .github/workflows/sandpaper-version.txt |  2 +-
 3 files changed, 16 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/README.md b/.github/workflows/README.md
index 7076ddd9..d6edf88d 100644
--- a/.github/workflows/README.md
+++ b/.github/workflows/README.md
@@ -2,7 +2,7 @@
 
 This directory contains workflows to be used for Lessons using the {sandpaper}
 lesson infrastructure. Two of these workflows require R (`sandpaper-main.yaml`
-and `pr-receive.yaml`) and the rest are bots to handle pull request management.
+and `pr-recieve.yaml`) and the rest are bots to handle pull request management.
 
 These workflows will likely change as {sandpaper} evolves, so it is important to
 keep them up-to-date. To do this in your lesson you can do the following in your
@@ -94,7 +94,7 @@ branch called `update/workflows` and a pull request is created. Maintainers are
 encouraged to review the changes and accept the pull request if the outputs
 are okay.
 
-This update is run weekly or on demand.
+This update is run ~~weekly or~~ on demand.
 
 ### 03 Maintain: Update Package Cache (update-cache.yaml)
 
@@ -140,7 +140,7 @@ Once the checks are finished, a comment is issued to the pull request, which
 will allow maintainers to determine if it is safe to run the 
 "Receive Pull Request" workflow from new contributors.
 
-### Receive Pull Request (pr-receive.yaml)
+### Recieve Pull Request (pr-recieve.yaml)
 
 **Note of caution:** This workflow runs arbitrary code by anyone who creates a
 pull request. GitHub has safeguarded the token used in this workflow to have no
@@ -171,7 +171,7 @@ The artifacts produced are used by the next workflow.
 
 ### Comment on Pull Request (pr-comment.yaml)
 
-This workflow is triggered if the `pr-receive.yaml` workflow is successful.
+This workflow is triggered if the `pr-recieve.yaml` workflow is successful.
 The steps in this workflow are:
 
 1. Test if the workflow is valid and comment the validity of the workflow to the
diff --git a/.github/workflows/sandpaper-main.yaml b/.github/workflows/sandpaper-main.yaml
index e17707ac..25026ff7 100644
--- a/.github/workflows/sandpaper-main.yaml
+++ b/.github/workflows/sandpaper-main.yaml
@@ -29,6 +29,14 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
       RENV_PATHS_ROOT: ~/.local/share/renv/
+    services:
+      mysql:
+        image: mysql:8.0
+        env:
+          MYSQL_ROOT_PASSWORD: root
+        ports:
+          - "8888:3306"
+        options: --health-cmd="mysqladmin ping" --health-interval=10s --health-timeout=5s --health-retries=3
     steps:
 
       - name: "Checkout Lesson"
@@ -53,6 +61,9 @@ jobs:
         with:
           cache-version: ${{ secrets.CACHE_VERSION }}
 
+      - name: Setup slurm
+        uses: koesterlab/setup-slurm-action@v1
+
       - name: "Deploy Site"
         run: |
           reset <- "${{ github.event.inputs.reset }}" == "true"
diff --git a/.github/workflows/sandpaper-version.txt b/.github/workflows/sandpaper-version.txt
index 19270385..930e3000 100644
--- a/.github/workflows/sandpaper-version.txt
+++ b/.github/workflows/sandpaper-version.txt
@@ -1 +1 @@
-0.16.5
+0.14.1