diff --git a/config.yaml b/config.yaml new file mode 100644 index 00000000..d7951c6c --- /dev/null +++ b/config.yaml @@ -0,0 +1,87 @@ +#------------------------------------------------------------ +# Values for this lesson. +#------------------------------------------------------------ + +# Which carpentry is this (swc, dc, lc, or cp)? +# swc: Software Carpentry +# dc: Data Carpentry +# lc: Library Carpentry +# cp: Carpentries (to use for instructor training for instance) +# incubator: The Carpentries Incubator +carpentry: 'incubator' + +# Overall title for pages. +title: 'Introduction to targets' + +# Date the lesson was created (YYYY-MM-DD, this is empty by default) +created: ~ + +# Comma-separated list of keywords for the lesson +keywords: 'reproducibility, data, targets, R' + +# Life cycle stage of the lesson +# possible values: pre-alpha, alpha, beta, stable +life_cycle: 'pre-alpha' + +# License of the lesson +license: 'CC-BY 4.0' + +# Link to the source repository for this lesson +source: 'https://github.com/joelnitta/targets-workshop' + +# Default branch of your lesson +branch: 'main' + +# Who to contact if there are any issues +contact: 'joelnitta@gmail.com' + +# Navigation ------------------------------------------------ +# +# Use the following menu items to specify the order of +# individual pages in each dropdown section. Leave blank to +# include all pages in the folder. +# +# Example ------------- +# +# episodes: +# - introduction.md +# - first-steps.md +# +# learners: +# - setup.md +# +# instructors: +# - instructor-notes.md +# +# profiles: +# - one-learner.md +# - another-learner.md + +# Order of episodes in your lesson +episodes: +- introduction.Rmd +- basic-targets.Rmd +- cache.Rmd +- lifecycle.Rmd +- organization.Rmd +- packages.Rmd +- files.Rmd +- branch.Rmd +- parallel.Rmd +- quarto.Rmd + +# Information for Learners +learners: + +# Information for Instructors +instructors: + +# Learner Profiles +profiles: + +# Customisation --------------------------------------------- +# +# This space below is where custom yaml items (e.g. pinning +# sandpaper and varnish versions) should live + + diff --git a/md5sum.txt b/md5sum.txt index 07f1059c..0d08dcd7 100644 --- a/md5sum.txt +++ b/md5sum.txt @@ -12,10 +12,10 @@ "episodes/packages.Rmd" "2c0eb6138ea6685a0ee279c89b381bc4" "site/built/packages.md" "2024-07-10" "episodes/files.Rmd" "b7f4ef83379a58d5c30d8e011e3b2c0d" "site/built/files.md" "2024-07-10" "episodes/branch.Rmd" "6f1187d6df3310eb042aaae3a44328dc" "site/built/branch.md" "2024-07-10" -"episodes/parallel.Rmd" "f9b7709ceae26b281ea5919835f5260b" "site/built/parallel.md" "2024-07-10" +"episodes/parallel.Rmd" "3ec032e9a527138e70e2efb4e5a10410" "site/built/parallel.md" "2024-07-10" "episodes/quarto.Rmd" "b854a0a44fd0ec7e503c9e99d21f8fce" "site/built/quarto.md" "2024-07-10" "instructors/instructor-notes.md" "df3784ee5c0436a9e171071f7965d3fc" "site/built/instructor-notes.md" "2024-07-10" "learners/reference.md" "3f06251c1f932e767ae8f22db25eb5a2" "site/built/reference.md" "2024-07-10" -"learners/setup.md" "b4bdd601ab985cf048829f49710df7fc" "site/built/setup.md" "2024-07-10" +"learners/setup.md" "f70118c3c9db0824c172248927d7a1af" "site/built/setup.md" "2024-07-10" "profiles/learner-profiles.md" "44d8b9d8aca7963e6577e8c67d23eac0" "site/built/learner-profiles.md" "2024-07-10" "renv/profiles/lesson-requirements/renv.lock" "b771e019c59a11a94a4000b93ad77f9b" "site/built/renv.lock" "2024-07-10" diff --git a/parallel.md b/parallel.md index c90eca86..dc47fa28 100644 --- a/parallel.md +++ b/parallel.md @@ -40,25 +40,6 @@ Most workflows that use branching can benefit from parallelism. Here, we assume you are running this analysis on a laptop and so will use a relatively simple backend. If you are interested in high-performance computing, [see the `targets` manual](https://books.ropensci.org/targets/hpc.html). -### Install R packages for parallel computing - -For this demo, we will use the new [`crew` backend](https://wlandau.github.io/crew/). - -::::::::::::::::::::::::::::::::::::: {.prereq} - -### Install required packages - -You will need to install several packages to use the `crew` backend: - - -``` r -install.packages("nanonext", repos = "https://shikokuchuo.r-universe.dev") -install.packages("mirai", repos = "https://shikokuchuo.r-universe.dev") -install.packages("crew", type = "source") -``` - -::::::::::::::::::::::::::::::::::::: - ### Set up workflow To enable parallel processing with `crew` you only need to load the `crew` package, then tell `targets` to use it using `tar_option_set`. diff --git a/renv.lock b/renv.lock new file mode 100644 index 00000000..72863721 --- /dev/null +++ b/renv.lock @@ -0,0 +1,1783 @@ +{ + "R": { + "Version": "4.4.1", + 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