From d517679a516993e502a0bdaccad1090ae6702e8f Mon Sep 17 00:00:00 2001 From: Marek Schwarz Date: Mon, 25 Nov 2019 10:48:42 +0100 Subject: [PATCH] Bump version and docker description --- docs/docker.md | 9 +++++---- rna_blast_analyze/VERSION | 2 +- 2 files changed, 6 insertions(+), 5 deletions(-) diff --git a/docs/docker.md b/docs/docker.md index fd3bd16..a9ca648 100644 --- a/docs/docker.md +++ b/docs/docker.md @@ -13,10 +13,11 @@ Install compatible docker version from https://www.docker.com/. - The Rfam database is in the container and it's version is 14.1. - The container is ready to use - no other preparation should be necessary -## Prepare for running the examples +## Running the examples inside the docker container +### Prepare for running the examples - Pull rboAnalyzer image ``` - docker pull schwarzmarek/rboanalyzer:0.1 + docker pull schwarzmarek/rboanalyzer:0.1.4 ``` - Obtain the `examples` directory @@ -29,11 +30,11 @@ Install compatible docker version from https://www.docker.com/. Inside the session you can run rboAnalyzer commands. Take care to point the output files to the mounted directory (otherwise they will not be saved). The commnand below expects that you are inside the directory with the data you want to analyze (e.g. the `examples` directory) and does following: -- Runs the `/bin/bash` in the specified container (`schwarzmarek/rboanalyzer:0.1`) in the interactive mode (`-it`) +- Runs the `/bin/bash` in the specified container (`schwarzmarek/rboanalyzer:0.1.4`) in the interactive mode (`-it`) thus providing interactive session - Mounts the current directory (`source="$(pwd)"`) to `/data` directory (`target=/data`) inside the container. This will cause that any changes in the mounted directory inside the container will be propagated to the directory on host. (for other options see https://docs.docker.com/storage/) ``` -docker container run -it --mount type=bind,source="$(pwd)",target=/data schwarzmarek/rboanalyzer:0.1 /bin/bash +docker container run -it --mount type=bind,source="$(pwd)",target=/data schwarzmarek/rboanalyzer:0.1.4 /bin/bash ``` Now you should see the content of the `examples` dictionary. If so, you can execute the commands from the [Example](../readme.md#Example) section. \ No newline at end of file diff --git a/rna_blast_analyze/VERSION b/rna_blast_analyze/VERSION index 446ba66..1a3c67c 100644 --- a/rna_blast_analyze/VERSION +++ b/rna_blast_analyze/VERSION @@ -1 +1 @@ -0.1.4 \ No newline at end of file +0.1.4a2 \ No newline at end of file