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environment.yml
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name: stardist2
channels:
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- absl-py=2.1.0=pyhd8ed1ab_0
- aiohttp=3.9.3=py39hd1e30aa_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- aom=3.8.1=h59595ed_0
- asttokens=2.4.1=pyhd8ed1ab_0
- astunparse=1.6.3=pyhd8ed1ab_0
- async-timeout=4.0.3=pyhd8ed1ab_0
- attrs=23.2.0=pyh71513ae_0
- blinker=1.7.0=pyhd8ed1ab_0
- blosc=1.21.5=h0f2a231_0
- brotli=1.1.0=hd590300_1
- brotli-bin=1.1.0=hd590300_1
- brotli-python=1.1.0=py39h3d6467e_1
- brunsli=0.1=h9c3ff4c_0
- bzip2=1.0.8=hd590300_5
- c-ares=1.27.0=hd590300_0
- c-blosc2=2.13.2=hb4ffafa_0
- ca-certificates=2024.2.2=hbcca054_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cachetools=5.3.3=pyhd8ed1ab_0
- certifi=2024.2.2=py39h06a4308_0
- cffi=1.16.0=py39h7a31438_0
- charls=2.4.2=h59595ed_0
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- click=8.1.7=unix_pyh707e725_0
- colorama=0.4.6=pyhd8ed1ab_0
- comm=0.2.1=pyhd8ed1ab_0
- contourpy=1.2.0=py39h7633fee_0
- cryptography=42.0.5=py39hd4f0224_0
- csbdeep=0.7.4=py39hf3d152e_1
- cuda-crt-tools=12.3.107=ha770c72_0
- cuda-cudart=12.3.101=hd3aeb46_0
- cuda-cudart_linux-64=12.3.101=h59595ed_0
- cuda-nvcc-tools=12.3.107=hd3aeb46_0
- cuda-nvrtc=12.3.107=hd3aeb46_0
- cuda-nvtx=12.3.101=h59595ed_0
- cuda-nvvm-tools=12.3.107=h59595ed_0
- cuda-version=12.3=h32bc705_2
- cudnn=8.8.0.121=h264754d_4
- cycler=0.12.1=pyhd8ed1ab_0
- dav1d=1.2.1=hd590300_0
- debugpy=1.8.1=py39h3d6467e_0
- decorator=5.1.1=pyhd8ed1ab_0
- exceptiongroup=1.2.0=pyhd8ed1ab_2
- executing=2.0.1=pyhd8ed1ab_0
- flatbuffers=23.5.26=h59595ed_1
- fonttools=4.49.0=py39hd1e30aa_0
- freetype=2.12.1=h267a509_2
- frozenlist=1.4.1=py39hd1e30aa_0
- gast=0.5.4=pyhd8ed1ab_0
- giflib=5.2.1=h0b41bf4_3
- google-auth=2.28.1=pyhca7485f_0
- google-auth-oauthlib=1.2.0=pyhd8ed1ab_0
- google-pasta=0.2.0=pyh8c360ce_0
- grpcio=1.59.3=py39h174d805_0
- h5py=3.10.0=nompi_py39h2c511df_101
- hdf5=1.14.3=nompi_h4f84152_100
- icu=73.2=h59595ed_0
- idna=3.6=pyhd8ed1ab_0
- imagecodecs=2024.1.1=py39hf9b8f0e_0
- imageio=2.34.0=pyh4b66e23_0
- importlib-metadata=7.0.1=pyha770c72_0
- importlib-resources=6.1.2=pyhd8ed1ab_0
- importlib_metadata=7.0.1=hd8ed1ab_0
- importlib_resources=6.1.2=pyhd8ed1ab_0
- ipykernel=6.29.3=pyhd33586a_0
- ipython=8.18.1=pyh707e725_3
- jedi=0.19.1=pyhd8ed1ab_0
- jupyter_client=8.6.0=pyhd8ed1ab_0
- jupyter_core=5.7.1=py39hf3d152e_0
- jxrlib=1.1=hd590300_3
- keras=2.15.0=pyhd8ed1ab_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py39h7633fee_1
- krb5=1.21.2=h659d440_0
- lazy_loader=0.3=pyhd8ed1ab_0
- lcms2=2.16=hb7c19ff_0
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libabseil=20230802.1=cxx17_h59595ed_0
- libaec=1.1.2=h59595ed_1
- libavif16=1.0.4=h1dcd450_0
- libblas=3.9.0=21_linux64_openblas
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcblas=3.9.0=21_linux64_openblas
- libcublas=12.3.4.1=hd3aeb46_0
- libcufft=11.0.12.1=hd3aeb46_0
- libcurand=10.3.4.107=hd3aeb46_0
- libcurl=8.5.0=hca28451_0
- libcusolver=11.5.4.101=hd3aeb46_0
- libcusparse=12.2.0.103=hd3aeb46_0
- libdeflate=1.19=hd590300_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libevent=2.1.12=hdbd6064_1
- libffi=3.4.2=h7f98852_5
- libgcc-ng=13.2.0=h807b86a_5
- libgfortran-ng=13.2.0=h69a702a_5
- libgfortran5=13.2.0=ha4646dd_5
- libgomp=13.2.0=h807b86a_5
- libgrpc=1.59.3=hd6c4280_0
- libjpeg-turbo=3.0.0=hd590300_1
- liblapack=3.9.0=21_linux64_openblas
- libllvm14=14.0.6=hcd5def8_4
- libnghttp2=1.58.0=h47da74e_1
- libnsl=2.0.1=hd590300_0
- libnvjitlink=12.3.101=hd3aeb46_0
- libopenblas=0.3.26=pthreads_h413a1c8_0
- libpng=1.6.43=h2797004_0
- libprotobuf=4.24.4=hf27288f_0
- libre2-11=2023.09.01=h7a70373_1
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.45.1=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-ng=13.2.0=h7e041cc_5
- libtiff=4.6.0=ha9c0a0a_2
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.3.2=hd590300_0
- libxcb=1.15=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libzlib=1.2.13=hd590300_5
- libzopfli=1.0.3=h9c3ff4c_0
- llvmlite=0.42.0=py39h174d805_1
- lz4-c=1.9.4=hcb278e6_0
- markdown=3.5.2=pyhd8ed1ab_0
- markupsafe=2.1.5=py39hd1e30aa_0
- matplotlib-base=3.8.3=py39he9076e7_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- ml_dtypes=0.2.0=py39hddac248_2
- multidict=6.0.5=py39hd1e30aa_0
- munkres=1.1.4=pyh9f0ad1d_0
- nccl=2.20.3.1=h3a97aeb_0
- ncurses=6.4=h59595ed_2
- nest-asyncio=1.6.0=pyhd8ed1ab_0
- networkx=3.2.1=pyhd8ed1ab_0
- numba=0.59.0=py39h615d6bd_1
- numpy=1.26.4=py39h474f0d3_0
- oauthlib=3.2.2=pyhd8ed1ab_0
- openjpeg=2.5.1=h488ebb8_0
- openssl=3.2.1=hd590300_0
- opt_einsum=3.3.0=pyhc1e730c_2
- packaging=23.2=pyhd8ed1ab_0
- parso=0.8.3=pyhd8ed1ab_0
- pexpect=4.9.0=pyhd8ed1ab_0
- pickleshare=0.7.5=py_1003
- pillow=10.2.0=py39had0adad_0
- pip=24.0=pyhd8ed1ab_0
- platformdirs=4.2.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.42=pyha770c72_0
- protobuf=4.24.4=py39h60f6b12_0
- psutil=5.9.8=py39hd1e30aa_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pyasn1=0.5.1=pyhd8ed1ab_0
- pyasn1-modules=0.3.0=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.17.2=pyhd8ed1ab_0
- pyjwt=2.8.0=pyhd8ed1ab_1
- pyopenssl=24.0.0=pyhd8ed1ab_0
- pyparsing=3.1.1=pyhd8ed1ab_0
- pysocks=1.7.1=pyha2e5f31_6
- python=3.9.18=h0755675_1_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-flatbuffers=23.5.26=pyhd8ed1ab_0
- python_abi=3.9=4_cp39
- pyu2f=0.1.5=pyhd8ed1ab_0
- pywavelets=1.4.1=py39h44dd56e_1
- pyzmq=25.1.2=py39h8c080ef_0
- rav1e=0.6.6=he8a937b_2
- re2=2023.09.01=h7f4b329_1
- readline=8.2=h8228510_1
- requests=2.31.0=pyhd8ed1ab_0
- requests-oauthlib=1.3.1=pyhd8ed1ab_0
- rsa=4.9=pyhd8ed1ab_0
- scikit-image=0.22.0=py39hddac248_2
- scipy=1.12.0=py39h474f0d3_2
- setuptools=69.1.1=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- snappy=1.1.10=h9fff704_0
- stack_data=0.6.2=pyhd8ed1ab_0
- stardist=0.8.5=py39h40cae4c_1
- svt-av1=1.8.0=h59595ed_0
- tensorboard=2.15.2=pyhd8ed1ab_0
- tensorboard-data-server=0.7.0=py39hd4f0224_1
- tensorflow-estimator=2.15.0=cuda120py39ha585809_3
- termcolor=2.4.0=pyhd8ed1ab_0
- tifffile=2024.2.12=pyhd8ed1ab_0
- tk=8.6.13=noxft_h4845f30_101
- tmux=3.4=hb25038b_0
- tornado=6.4=py39hd1e30aa_0
- tqdm=4.66.2=pyhd8ed1ab_0
- traitlets=5.14.1=pyhd8ed1ab_0
- typing-extensions=4.10.0=hd8ed1ab_0
- typing_extensions=4.10.0=pyha770c72_0
- unicodedata2=15.1.0=py39hd1e30aa_0
- urllib3=2.2.1=pyhd8ed1ab_0
- wcwidth=0.2.13=pyhd8ed1ab_0
- werkzeug=3.0.1=pyhd8ed1ab_0
- wheel=0.42.0=pyhd8ed1ab_0
- wrapt=1.14.1=py39hb9d737c_1
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xz=5.2.6=h166bdaf_0
- yarl=1.9.4=py39hd1e30aa_0
- zeromq=4.3.5=h59595ed_1
- zfp=1.0.1=h59595ed_0
- zipp=3.17.0=pyhd8ed1ab_0
- zlib-ng=2.0.7=h0b41bf4_0
- zstd=1.5.5=hfc55251_0
- pip:
- albumentations==1.4.1
- joblib==1.3.2
- libclang==16.0.6
- nvidia-cublas-cu12==12.2.5.6
- nvidia-cuda-cupti-cu12==12.2.142
- nvidia-cuda-nvcc-cu12==12.2.140
- nvidia-cuda-nvrtc-cu12==12.2.140
- nvidia-cuda-runtime-cu12==12.2.140
- nvidia-cudnn-cu12==8.9.4.25
- nvidia-cufft-cu12==11.0.8.103
- nvidia-curand-cu12==10.3.3.141
- nvidia-cusolver-cu12==11.5.2.141
- nvidia-cusparse-cu12==12.1.2.141
- nvidia-nccl-cu12==2.16.5
- nvidia-nvjitlink-cu12==12.2.140
- opencv-python-headless==4.9.0.80
- pandas==2.2.1
- pydot==2.0.0
- pytz==2024.1
- pyyaml==6.0.1
- scikit-learn==1.4.1.post1
- seaborn==0.13.2
- tensorflow==2.15.0.post1
- tensorflow-io-gcs-filesystem==0.36.0
- threadpoolctl==3.3.0
- tzdata==2024.1
prefix: /opt/miniconda3/envs/stardist2