pass unique_modus argument

viloca/local_haplotype_inference/use_quality_scores/run_dpm_mfa.py

@@ -33,7 +33,7 @@ def main(
     K,
     alpha0,
     alphabet="ACGT-",
-    unique_modus=False,
+    unique_modus=True,
     convergence_threshold=1e-03,
 ):
 
@@ -46,7 +46,7 @@ def main(
     reference_binary, ref_id = preparation.load_reference_seq(fref_in, alphabet)
 
     reads_list, qualities = preparation.load_fasta_and_qualities(
-        freads_in, fname_qualities, alphabet, False
+        freads_in, fname_qualities, alphabet, unique_modus
     )
     reads_seq_binary, reads_weights = preparation.reads_list_to_array(reads_list)
     reads_log_error_proba = preparation.compute_reads_log_error_proba(
@@ -147,9 +147,9 @@ def main(
         sys.argv[1],
         sys.argv[2],
         sys.argv[3],
-        int(sys.argv[4]),
+        sys.argv[4],
         int(sys.argv[5]),
-        float(sys.argv[6]),
-        sys.argv[7],
+        int(sys.argv[6]),
+        float(sys.argv[7]),
     )
 # freads_in, fref_in, output_dir, n_starts, K, alpha0, alphabet = 'ACGT-'