diff --git a/add_hpo_terms_to_wes.py b/add_hpo_terms_to_wes.py index 07d6c95..0464404 100755 --- a/add_hpo_terms_to_wes.py +++ b/add_hpo_terms_to_wes.py @@ -11,7 +11,7 @@ #Phenotips TSV has a space in column name: " Gene symbol" HPO_DF.columns = HPO_DF.columns.str.strip() -HPO_DF.rename(columns={'Gene symbol': 'Gene Symbol'}) +HPO_DF.columns = HPO_DF.columns.str.replace("symbol","Symbol") WES_REPORT = pd.read_csv(sys.argv[2], encoding="ISO-8859-1").set_index("Position") OUT = "%s.w_hpoterms.tsv" % splitext(basename(sys.argv[2]))[0]