diff --git a/server/src/resolvers/getVariantsResolver/getVariantsResolver.ts b/server/src/resolvers/getVariantsResolver/getVariantsResolver.ts index 130f666c..6055c316 100644 --- a/server/src/resolvers/getVariantsResolver/getVariantsResolver.ts +++ b/server/src/resolvers/getVariantsResolver/getVariantsResolver.ts @@ -24,8 +24,9 @@ const getVariants = async (parent: any, args: QueryInput): Promise arg.source !== 'CADD annotations'; + arg: VariantQueryResponse | CADDAnnotationQueryResponse | GnomadAnnotationQueryResponse +): arg is VariantQueryResponse => + arg.source !== 'CADD annotations' && arg.source !== 'gnomAD annotations'; const resolveVariantQuery = timeitAsync('resolveVariantQuery')( async (args: QueryInput): Promise => { @@ -90,11 +91,14 @@ const resolveVariantQuery = timeitAsync('resolveVariantQuery')( const slurmJob = await slurm.slurmctldSubmitJob( { - script: '#!/bin/bash\necho Hello World!', + script: '#!/bin/bash\n./slurm-script-1.sh', job: { - environment: { SBATCH_DEBUG: 1 }, + environment: { SBATCH_DEBUG: 1, PATH: '/bin:/usr/bin/:/usr/local/bin/' }, current_working_directory: '/home/jxu', standard_output: 'test.out', + standard_error: 'test_error.out', + memory_per_node: 4096, + time_limit: 3000, }, }, {