diff --git a/libtbx/auto_build/bootstrap.py b/libtbx/auto_build/bootstrap.py index 0d04552c88..47e27a8257 100644 --- a/libtbx/auto_build/bootstrap.py +++ b/libtbx/auto_build/bootstrap.py @@ -2114,13 +2114,13 @@ def add_base(self, extra_opts=[]): self.skip_base = "hdf5,lz4_plugin,py2app,wxpython,docutils,pyopengl,pillow,tiff," + \ "cairo,fonts,render,fontconfig,pixman,png,sphinx,freetype,gtk,matplotlib," + \ "cython,h5py,gettext,numpy,pythonextra,pytest,junitxml,libsvm,pyrtf,six,send2trash," + \ - "jinja2,orderedset,tabulate,scipy,scikit_learn,biopython,expat,glib,mrcfile" + "jinja2,ordered_set,tabulate,scipy,scikit_learn,biopython,expat,glib,mrcfile" else: self.skip_base = ','.join(self.skip_base.split(',') + ['hdf5','lz4_plugin','py2app', 'wxpython','docutils','pyopengl','pillow','tiff','cairo','fonts','pyrtf','six','send2trash', 'fontconfig','render','pixman','png','sphinx','freetype','gtk', 'matplotlib', 'cython', 'h5py', 'gettext', 'numpy', 'pythonextra', 'pytest', 'junitxml','libsvm', - 'jinja2', 'orderedset', 'tabulate', 'scipy', 'scikit_learn', 'biopython', + 'jinja2', 'ordered_set', 'tabulate', 'scipy', 'scikit_learn', 'biopython', 'expat', 'glib', 'mrcfile' ]) super(PhaserBuilder, self).add_base( diff --git a/libtbx/auto_build/install_base_packages.py b/libtbx/auto_build/install_base_packages.py index c11960aa40..e7c1d5ec51 100644 --- a/libtbx/auto_build/install_base_packages.py +++ b/libtbx/auto_build/install_base_packages.py @@ -280,7 +280,7 @@ def configure_packages(self, options): if options.dials: options.build_gui = True options.build_all = True - packages += ['pillow', 'jinja2', 'orderedset', 'scipy', 'scikit_learn', 'tqdm', 'msgpack'] + packages += ['pillow', 'jinja2', 'ordered_set', 'scipy', 'scikit_learn', 'tqdm', 'msgpack'] if options.xia2: options.build_gui = True options.build_all = True @@ -727,7 +727,7 @@ def build_dependencies(self, packages=None): 'misc', 'lz4_plugin', 'jinja2', - 'orderedset', + 'ordered_set', 'tqdm', 'tabulate', 'psutil', @@ -1165,8 +1165,8 @@ def build_jinja2(self): def build_orderedset(self): self.build_python_module_pip( - 'orderedset', package_version=ORDEREDSET_VERSION, - confirm_import_module='orderedset') + 'ordered_set', package_version=ORDEREDSET_VERSION, + confirm_import_module='ordered_set') def build_tqdm(self): self.build_python_module_pip('tqdm', package_version=TQDM_VERSION) diff --git a/xfel/conda_envs/psana_environment.yml b/xfel/conda_envs/psana_environment.yml index f508c81d98..ee78160564 100644 --- a/xfel/conda_envs/psana_environment.yml +++ b/xfel/conda_envs/psana_environment.yml @@ -56,7 +56,7 @@ dependencies: - msgpack-python - msgpack-c - msgpack-cxx - - orderedset + - ordered_set - python-blosc - scikit-learn - tqdm diff --git a/xfel/merging/application/input/file_lister.py b/xfel/merging/application/input/file_lister.py index d8a9982ab1..e500a5050d 100644 --- a/xfel/merging/application/input/file_lister.py +++ b/xfel/merging/application/input/file_lister.py @@ -6,7 +6,7 @@ from six.moves import UserDict import numpy as np -from orderedset import OrderedSet +from ordered_set import OrderedSet class StemLocator(UserDict): diff --git a/xfel/merging/application/modify/aux_cosym.py b/xfel/merging/application/modify/aux_cosym.py index 9866cf5920..32f7c5f6ef 100644 --- a/xfel/merging/application/modify/aux_cosym.py +++ b/xfel/merging/application/modify/aux_cosym.py @@ -6,7 +6,7 @@ from libtbx import easy_mp, Auto from scipy import sparse import numpy as np -from orderedset import OrderedSet +from ordered_set import OrderedSet import copy # Specialization, run only a subset of cosym steps and include plot