You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hey! I ran into this error while trying to get the models from the cellcollective:
In [12]: import ccapi
In [13]: client=ccapi.Client()
In [14]: models=client.get('model')
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
<ipython-input-14-ea451a0c5350> in <module>
----> 1 models=client.get('model')
~/anaconda2/envs/python_3_env/lib/python3.7/site-packages/ccapi-0.1.0-py3.7.egg/ccapi/api/client.py in get(self, resource, *args, **kwargs)
498 ids = [data["model"]["id"] for data in content]
499
--> 500 resources = self.get("model", id = ids)
501 elif _resource == "user":
502 if not id_:
~/anaconda2/envs/python_3_env/lib/python3.7/site-packages/ccapi-0.1.0-py3.7.egg/ccapi/api/client.py in get(self, resource, *args, **kwargs)
469 _model_content_to_model(model,
470 users = users, client = self) \
--> 471 for _, model in iteritems(models)
472 ])
473 else:
~/anaconda2/envs/python_3_env/lib/python3.7/site-packages/ccapi-0.1.0-py3.7.egg/ccapi/api/client.py in <listcomp>(.0)
469 _model_content_to_model(model,
470 users = users, client = self) \
--> 471 for _, model in iteritems(models)
472 ])
473 else:
~/anaconda2/envs/python_3_env/lib/python3.7/site-packages/ccapi-0.1.0-py3.7.egg/ccapi/api/helper.py in _model_content_to_model(content, users, client)
228 users = users,
229 parent = model,
--> 230 client = client,
231 )
232 model = _merge_metadata_to_model(model, meta)
~/anaconda2/envs/python_3_env/lib/python3.7/site-packages/ccapi-0.1.0-py3.7.egg/ccapi/api/helper.py in _model_version_response_to_boolean_model(response, meta, users, parent, client)
163 type = lower(regulator_data["regulationType"]),
164 conditions = [data["condition"]
--> 165 for _, data in iteritems(condition_map)
166 if data["regulator_id"] == int(regulator_id)
167 ]
TypeError: __init__() missing 1 required positional argument: 'species'
I got the same error also with an authenticated client and also when running the example from the documentation:
model = ccapi.load_model("fibroblasts", client = client)
I hope it's an easy fix. Thanks! :)
P.S. I installed the package by running the setup.py install after cloning it from GitHub, because I can't seem to find it in pip. I'm running Ubuntu 18.04.
The text was updated successfully, but these errors were encountered:
Hey! I ran into this error while trying to get the models from the cellcollective:
I got the same error also with an authenticated client and also when running the example from the documentation:
model = ccapi.load_model("fibroblasts", client = client)
I hope it's an easy fix. Thanks! :)
P.S. I installed the package by running the setup.py install after cloning it from GitHub, because I can't seem to find it in pip. I'm running Ubuntu 18.04.
The text was updated successfully, but these errors were encountered: