Matlab framework for extracting migration data out of microscopical video sequences showing living cells.
This repository bases on our validated cell tracking algorithm published in [1]. The matlabMigrationAnalysis implements a cell tracking scheme dedicated to migration analysis.
MATLAB and the the Image Processing Library. For batch processing, the Parallel processing toolbox is usefull but not required.
- clone the repository
- Start MATLAB and run the file
startMigrationAnalysisGui.m
A user guide can be found in the documentation folder.
MIT, see LICENSE file.
[1] A novel validation algorithm allows for automated cell tracking and the extraction of biologically meaningful parameters, DH Rapoport*, T Becker*, AM Mamlouk, S Schicktanz, C Kruse, PloS one 6 (11), e27315