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build.xml
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build.xml
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<?xml version="1.0"?>
<!--
~ The MIT License
~
~ Copyright (c) 2009 The Broad Institute
~
~ Permission is hereby granted, free of charge, to any person obtaining a copy
~ of this software and associated documentation files (the "Software"), to deal
~ in the Software without restriction, including without limitation the rights
~ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
~ copies of the Software, and to permit persons to whom the Software is
~ furnished to do so, subject to the following conditions:
~
~ The above copyright notice and this permission notice shall be included in
~ all copies or substantial portions of the Software.
~
~ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
~ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
~ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
~ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
~ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
~ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
~ THE SOFTWARE.
-->
<project name="picard-public" basedir="." default="all">
<property name="src" value="src/java"/>
<property name="src.scripts" value="src/scripts"/>
<property name="src.test" value="src/tests"/>
<property name="src.test.java" value="${src.test}/java"/>
<property name="src.www" value="src/www"/>
<property name="lib" value="lib"/>
<property name="dist" value="dist"/>
<property name="dist.tmp" value="dist/tmp"/>
<property name="classes" value="classes"/>
<property name="classes.test" value="testclasses"/>
<property name="scripts" value="src/scripts"/>
<property name="reports" value="dist/test"/>
<property name="test.output" value="dist/test"/>
<property name="htsjdk_lib_dir" value="${dist}/htsjdk_lib_dir"/>
<property name="htsjdk_git_url" value="[email protected]:samtools/htsjdk.git"/>
<!-- TODO: get this from the build.xml in htsjdk -->
<property name="htsjdk-classes" value="htsjdk/classes"/>
<property name="javac.target" value="1.8"/>
<property name="javac.debug" value="true"/>
<!-- Get GIT hash, if available, otherwise leave it blank. -->
<exec executable="git" outputproperty="repository.revision" failifexecutionfails="true" errorproperty="">
<arg value="log"/>
<arg value="-1"/>
<arg value="--pretty=format:%H_%at"/>
</exec>
<property name="repository.revision" value=""/>
<property name="picard-version" value="2.1.0"/>
<property name="command-line-html-dir" value="${dist}/html"/>
<property name="testng.verbosity" value="2"/>
<property name="test.debug.port" value="5005"/>
<!-- override on the command line if desired -->
<property environment="env"/>
<property name="htsjdk" value="htsjdk"/>
<property name="htsjdk_src" value="${htsjdk}/src/java"/>
<property name="jar_opt" value=".jar_opt"/>
<condition property="isUnix">
<os family="unix"/>
</condition>
<!-- Import JaCoCo Ant tasks -->
<taskdef uri="antlib:org.jacoco.ant" resource="org/jacoco/ant/antlib.xml">
<classpath path="lib/ant/jacocoant.jar" />
</taskdef>
<target name="set_excluded_test_groups_unix" if="isUnix">
<property name="excludedTestGroups" value="slow, broken"/>
</target>
<target name="set_excluded_test_groups_non_unix" unless="isUnix">
<property name="excludedTestGroups" value="slow, broken, unix"/>
</target>
<target name="set_excluded_test_groups" depends="set_excluded_test_groups_unix,set_excluded_test_groups_non_unix"/>
<!-- INIT -->
<target name="init">
<path id="classpath">
<fileset dir="${htsjdk_lib_dir}">
<include name="*.jar"/>
<include name="**/*.jar"/>
</fileset>
<!-- for the specific HTSJDK library JARs -->
<fileset dir="${htsjdk}/lib">
<include name="*.jar"/>
<include name="**/*.jar"/>
</fileset>
<fileset dir="${lib}">
<include name="**/*.jar"/>
</fileset>
</path>
<path id="metrics.classpath">
<pathelement path="${classpath}"/>
<pathelement location="${classes}"/>
<pathelement location="${htsjdk}/classes"/>
</path>
</target>
<!-- CLEAN -->
<target name="clean-local" description="Delete local build products but not nested project" depends="clean-jar-opt">
<delete dir="${classes}"/>
<delete dir="${classes.test}"/>
<delete dir="${test.output}"/>
<delete dir="${dist}"/>
<delete dir="javadoc"/>
</target>
<target name="clean" description="Clean local build products and also nested project" depends="clean-local, clean-htsjdk"/>
<!-- HTS-JDK -->
<target name="set-htsjdk-version">
<!-- set the htsjdk version -->
<ant antfile="build.xml" dir="${htsjdk}" target="write-version-property" inheritall="false"/>
<loadfile property="htsjdk-version" srcFile="${htsjdk}/htsjdk.version.properties">
<filterchain>
<linecontains>
<contains value="htsjdk-version="/>
</linecontains>
<tokenfilter>
<replacestring from="htsjdk-version=" to=""/>
</tokenfilter>
<striplinebreaks/>
</filterchain>
</loadfile>
</target>
<target name="clone-htsjdk" description="Clone HTS-JDK sources from Sourceforge">
<exec executable="git" failonerror="true">
<arg value="clone"/>
<arg value="${htsjdk_git_url}"/>
<arg value="${htsjdk}"/>
</exec>
</target>
<target name="compile-htsjdk" depends="set-htsjdk-version" description="Build HTS-JDK, and grab build jars">
<ant antfile="build.xml" dir="${htsjdk}" target="clean" inheritall="false"/>
<ant antfile="build.xml" dir="${htsjdk}" target="all" inheritall="false"/>
<copy todir="${htsjdk_lib_dir}">
<fileset dir="${htsjdk}/dist" includes="**/*-*.jar"/>
<fileset dir="${htsjdk}/lib" includes="*.jar"/>
</copy>
<copy todir="${dist}">
<fileset dir="${htsjdk}/dist" includes="**/*.jar" excludes="**/*-*.jar"/>
</copy>
<!-- set the htsjdk version -->
<ant antfile="build.xml" dir="${htsjdk}" target="write-version-property" inheritall="false"/>
</target>
<target name="clean-htsjdk" description="Clean HTS-JDK">
<ant antfile="build.xml" dir="${htsjdk}" target="clean" inheritall="false"/>
</target>
<target name="test-htsjdk" description="Test HTS-JDK">
<ant antfile="build.xml" dir="${htsjdk}" target="test" inheritall="false"/>
</target>
<target name="compile-htsjdk-tests" description="Compile HTS-JDK Tests">
<ant antfile="build.xml" dir="${htsjdk}" target="compile-tests" inheritall="false"/>
</target>
<!-- COMPILE -->
<target name="compile" depends="compile-src, compile-tests"
description="Compile files without cleaning">
</target>
<target name="compile-src" depends="compile-htsjdk, compile-picard" description="Compile files without cleaning"/>
<target name="compile-picard" depends="init" description="Compile picard files without cleaning">
<compile-src includes="picard/**/*.*" />
</target>
<target name="compile-tests" depends="compile-htsjdk-tests, compile-picard-tests" description="Compile test files without cleaning"/>
<target name="compile-picard-tests" depends="init" description="Compile picard test files without cleaning">
<compile-tests includes="picard/**/*.*"/>
<copy todir="${classes.test}/">
<fileset dir="${src.test}/scripts" includes="**/*"/>
</copy>
</target>
<target name="build-timestamp">
<tstamp>
<format property="build.timestamp" pattern="yyyy.MM.dd hh.mm.ss" locale="en,US"/>
</tstamp>
<replace dir="${command-line-html-dir}" token="@builddate@" value="${build.timestamp}">
<include name="**/*.html"/>
</replace>
</target>
<!-- TEST -->
<target name="test" depends="compile, set_excluded_test_groups" description="Run unit tests">
<taskdef resource="testngtasks" classpathref="classpath"/>
<jacoco:coverage destfile="jacoco.data" xmlns:jacoco="antlib:org.jacoco.ant">
<testng suitename="picard-tests" classpathref="classpath" outputdir="${test.output}"
failureproperty="tests.failed" excludedgroups="${excludedTestGroups}" workingDir="${basedir}"
verbose="${testng.verbosity}">
<classpath>
<pathelement path="${classes}"/>
<pathelement path="${classes.test}"/>
<pathelement path="${scripts}"/>
</classpath>
<classfileset dir="${classes.test}">
<include name="**/Test*.class"/>
<include name="**/*Test.class"/>
</classfileset>
<jvmarg value="-Xmx2G"/>
</testng>
</jacoco:coverage>
<junitreport todir="${dist}/test">
<fileset dir="${test.output}">
<include name="*.xml"/>
</fileset>
<report format="noframes" todir="${dist}/test" styledir="etc/test"/>
</junitreport>
<copy file="etc/test/testng.css" todir="${dist}/test" overwrite="true"/>
<fail if="tests.failed" message="There were failed unit tests"/>
</target>
<target name="test-coverage-report" depends="test" description="Runs tests and creates an HTML code coverage report">
<jacoco:report xmlns:jacoco="antlib:org.jacoco.ant">
<executiondata>
<file file="jacoco.data"/>
</executiondata>
<structure name="Picard">
<classfiles>
<fileset dir="classes"/>
</classfiles>
<sourcefiles encoding="UTF-8">
<fileset dir="src"/>
</sourcefiles>
</structure>
<html destdir="report"/>
</jacoco:report>
</target>
<target name="single-test"
depends="compile, compile-tests"
description="Compile and run a single test.">
<taskdef resource="testngtasks" classpathref="classpath"/>
<fail unless="name" message="Please provide input test: -Dname=..."/>
<condition property="debug.jvm.args" value="-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=${test.debug.port}"
else="">
<isset property="test.debug"/>
</condition>
<testng suitename="picard-single-test" classpathref="classpath" outputdir="${test.output}"
verbose="${testng.verbosity}">
<jvmarg line="-Xmx512M ${debug.jvm.args}"/>
<classpath>
<pathelement path="${classes}"/>
<pathelement path="${classes.test}"/>
<pathelement path="${scripts}"/>
</classpath>
<classfileset dir="${classes.test}">
<include name="**/${name}.class"/>
</classfileset>
</testng>
</target>
<target name="process-external-jars" depends="clean-jar-opt, maybe-add-gatk-tools-java">
</target>
<target name="clean-jar-opt">
<delete dir="${jar_opt}"/>
<mkdir dir="${jar_opt}"/>
</target>
<target name="maybe-add-gatk-tools-java" if="addGATKToolsJava">
<mkdir dir="${jar_opt}"/>
<unzip dest="${jar_opt}">
<fileset dir="${lib}/gatk-tools-java">
<include name="*.jar"/>
</fileset>
</unzip>
</target>
<target name="picard-jar" depends="compile, process-external-jars"
description="Builds the main executable picard.jar">
<mkdir dir="${dist}"/>
<mkdir dir="${dist.tmp}"/>
<unjar dest="${dist.tmp}">
<fileset dir="${lib}">
<exclude name="**/jacocoant.jar"/> <!-- must exclude this jar from packing into picard - this is only used for testing -->
</fileset>
<fileset dir="${htsjdk_lib_dir}">
<include name="*.jar"/>
</fileset>
</unjar>
<jar destfile="${dist}/picard.jar" compress="no">
<fileset dir="${classes}" includes="picard/**/*.*, META-INF/**/*"/>
<fileset dir="${src.scripts}" includes="**/*.R"/>
<fileset dir="${htsjdk-classes}" includes ="${htsjdk}/*/**/*.*"/>
<fileset dir="${dist.tmp}" includes="**/*"/>
<fileset dir="${jar_opt}" includes="**/*"/>
<manifest>
<attribute name="Implementation-Version" value="${picard-version}(${repository.revision})"/>
<attribute name="Implementation-Vendor" value="Broad Institute"/>
<attribute name="Main-Class" value="picard.cmdline.PicardCommandLine"/>
<attribute name="Implementation-Title" value="PICARD Tools"/>
<attribute name="HTSJDK-Version" value="${htsjdk-version}"/>
</manifest>
</jar>
<delete dir="${dist.tmp}"/>
</target>
<target name="picard-lib-jar" depends="compile"
description="Builds the library: picard-lib.jar">
<mkdir dir="${dist}"/>
<jar destfile="${dist}/picard-lib.jar" compress="no">
<fileset dir="${classes}" includes="picard/**/*.*"/>
<fileset dir="${src.scripts}" includes="**/*.R"/>
<manifest>
<attribute name="Implementation-Version" value="${picard-version}(${repository.revision})"/>
<attribute name="Implementation-Vendor" value="Broad Institute"/>
<attribute name="Implementation-Title" value="PICARD Tools Library"/>
</manifest>
</jar>
</target>
<target name="javadoc" depends="init" description="Generates the project javadoc.">
<javadoc
destdir="javadoc/picard"
packagenames="picard*"
windowtitle="PICARD JDK API Documentation"
doctitle="<h1>PICARD JDK API Documentation</h1>"
author="true"
protected="true"
use="true"
version="true"
additionalparam="-Xdoclint:none -notimestamp"
failonerror="true"
excludepackagenames="htsjdk*">
<classpath>
<pathelement location="${java.home}/../lib/tools.jar"/>
<fileset dir="${lib}">
<include name="**/*.jar"/>
</fileset>
<fileset dir="${htsjdk}/dist">
<include name="**/*.jar"/>
</fileset>
<fileset dir="${htsjdk}/lib">
<include name="**/*.jar"/>
</fileset>
</classpath>
<link href="http://java.sun.com/j2se/1.6.0/docs/api/"/>
<fileset dir="${src}" defaultexcludes="yes">
<include name="**/*.java"/>
</fileset>
</javadoc>
<javadoc
destdir="javadoc/htsjdk"
packagenames="htsjdk*"
windowtitle="HTSJDK API Documentation"
doctitle="<h1>HTSJDK API Documentation</h1>"
author="true"
protected="true"
use="true"
version="true"
additionalparam="-Xdoclint:none -notimestamp"
failonerror="true"
excludepackagenames="picard*">
<classpath>
<pathelement location="${java.home}/../lib/tools.jar"/>
<fileset dir="${lib}">
<include name="**/*.jar"/>
</fileset>
<fileset dir="${htsjdk}/lib">
<include name="**/*.jar"/>
</fileset>
</classpath>
<link href="http://java.sun.com/j2se/1.6.0/docs/api/"/>
<fileset dir="${htsjdk_src}" defaultexcludes="yes">
<include name="**/*.java"/>
</fileset>
</javadoc>
<mkdir dir="${command-line-html-dir}"/>
<javadoc doclet="picard.util.MetricsDoclet"
docletpathref="metrics.classpath"
classpathref="metrics.classpath"
failonerror="true" verbose="true">
<classpath>
<pathelement location="${java.home}/../lib/tools.jar"/>
<fileset dir="${lib}">
<include name="**/*.jar"/>
</fileset>
<fileset dir="${htsjdk}/dist">
<include name="**/*.jar"/>
</fileset>
</classpath>
<fileset dir=".">
<include name="${src}/**/*.java"/>
<include name="${htsjdk_src}/**/*.java"/>
</fileset>
<arg line="-f ${command-line-html-dir}/picard-metric-definitions.html"/>
</javadoc>
</target>
<target name="add-ga4gh-support">
<property name="addGATKToolsJava" value="1"/>
</target>
<target name="package-commands-ga4gh" depends="add-ga4gh-support, compile, picard-jar" />
<target name="package-commands" depends="compile, picard-jar">
<delete dir="${command-line-html-dir}"/>
<!-- If you don't want to generate on-line doc for a command, use package-command instead of document-command -->
<document-command title="AddCommentsToBam" main-class="picard.sam.AddCommentsToBam"/>
<document-command title="AddOrReplaceReadGroups" main-class="picard.sam.AddOrReplaceReadGroups"/>
<document-command title="BamToBfq" main-class="picard.fastq.BamToBfq"/>
<document-command title="BamIndexStats" main-class="picard.sam.BamIndexStats"/>
<document-command title="BedToIntervalList" main-class="picard.util.BedToIntervalList"/>
<document-command title="BuildBamIndex" main-class="picard.sam.BuildBamIndex"/>
<document-command title="CalculateHsMetrics" main-class="picard.analysis.directed.CalculateHsMetrics"/>
<document-command title="CleanSam" main-class="picard.sam.CleanSam"/>
<document-command title="CollectAlignmentSummaryMetrics" main-class="picard.analysis.CollectAlignmentSummaryMetrics"/>
<document-command title="CollectBaseDistributionByCycle" main-class="picard.analysis.CollectBaseDistributionByCycle"/>
<document-command title="CollectGcBiasMetrics" main-class="picard.analysis.CollectGcBiasMetrics"/>
<document-command title="CollectHsMetrics" main-class="picard.analysis.directed.CollectHsMetrics"/>
<document-command title="CollectInsertSizeMetrics" main-class="picard.analysis.CollectInsertSizeMetrics"/>
<document-command title="CollectMultipleMetrics" main-class="picard.analysis.CollectMultipleMetrics"/>
<document-command title="CollectTargetedPcrMetrics" main-class="picard.analysis.directed.CollectTargetedPcrMetrics"/>
<document-command title="CollectRnaSeqMetrics" main-class="picard.analysis.CollectRnaSeqMetrics"/>
<document-command title="CollectVariantCallingMetrics" main-class="picard.vcf.CollectVariantCallingMetrics"/>
<document-command title="CollectWgsMetrics" main-class="picard.analysis.CollectWgsMetrics"/>
<document-command title="CompareSAMs" main-class="picard.sam.CompareSAMs"/>
<document-command title="CreateSequenceDictionary" main-class="picard.sam.CreateSequenceDictionary"/>
<document-command title="DownsampleSam" main-class="picard.sam.DownsampleSam"/>
<document-command title="ExtractIlluminaBarcodes" main-class="picard.illumina.ExtractIlluminaBarcodes"/>
<document-command title="EstimateLibraryComplexity" main-class="picard.sam.markduplicates.EstimateLibraryComplexity"/>
<document-command title="FastqToSam" main-class="picard.sam.FastqToSam"/>
<document-command title="FifoBuffer" main-class="picard.util.FifoBuffer"/>
<document-command title="FilterSamReads" main-class="picard.sam.FilterSamReads"/>
<document-command title="FilterVcf" main-class="picard.vcf.filter.FilterVcf"/>
<document-command title="FixMateInformation" main-class="picard.sam.FixMateInformation"/>
<document-command title="GatherBamFiles" main-class="picard.sam.GatherBamFiles"/>
<document-command title="GatherVcfs" main-class="picard.vcf.GatherVcfs"/>
<document-command title="GenotypeConcordance" main-class="picard.vcf.GenotypeConcordance"/>
<document-command title="IlluminaBasecallsToFastq" main-class="picard.illumina.IlluminaBasecallsToFastq"/>
<document-command title="IlluminaBasecallsToSam" main-class="picard.illumina.IlluminaBasecallsToSam"/>
<document-command title="CheckIlluminaDirectory" main-class="picard.illumina.CheckIlluminaDirectory"/>
<document-command title="IntervalListTools" main-class="picard.util.IntervalListTools"/>
<document-command title="LiftoverVcf" main-class="picard.vcf.LiftoverVcf"/>
<document-command title="MakeSitesOnlyVcf" main-class="picard.vcf.MakeSitesOnlyVcf"/>
<document-command title="MarkDuplicates" main-class="picard.sam.markduplicates.MarkDuplicates"/>
<document-command title="MarkDuplicatesWithMateCigar" main-class="picard.sam.markduplicates.MarkDuplicatesWithMateCigar"/>
<document-command title="MeanQualityByCycle" main-class="picard.analysis.MeanQualityByCycle"/>
<document-command title="MergeBamAlignment" main-class="picard.sam.MergeBamAlignment"/>
<document-command title="MergeSamFiles" main-class="picard.sam.MergeSamFiles"/>
<document-command title="MergeVcfs" main-class="picard.vcf.MergeVcfs"/>
<document-command title="NormalizeFasta" main-class="picard.reference.NormalizeFasta"/>
<document-command title="ExtractSequences" main-class="picard.reference.ExtractSequences"/>
<document-command title="QualityScoreDistribution" main-class="picard.analysis.QualityScoreDistribution"/>
<document-command title="ReorderSam" main-class="picard.sam.ReorderSam"/>
<document-command title="ReplaceSamHeader" main-class="picard.sam.ReplaceSamHeader"/>
<document-command title="RevertSam" main-class="picard.sam.RevertSam"/>
<document-command title="RevertOriginalBaseQualitiesAndAddMateCigar"
main-class="picard.sam.RevertOriginalBaseQualitiesAndAddMateCigar"/>
<document-command title="SamFormatConverter" main-class="picard.sam.SamFormatConverter"/>
<document-command title="SamToFastq" main-class="picard.sam.SamToFastq"/>
<document-command title="SortSam" main-class="picard.sam.SortSam"/>
<document-command title="SortVcf" main-class="picard.vcf.SortVcf"/>
<document-command title="UpdateVcfSequenceDictionary" main-class="picard.vcf.UpdateVcfSequenceDictionary"/>
<document-command title="VcfFormatConverter" main-class="picard.vcf.VcfFormatConverter"/>
<document-command title="MarkIlluminaAdapters" main-class="picard.illumina.MarkIlluminaAdapters"/>
<document-command title="SplitVcfs" main-class="picard.vcf.SplitVcfs"/>
<document-command title="ValidateSamFile" main-class="picard.sam.ValidateSamFile"/>
<document-command title="ViewSam" main-class="picard.sam.ViewSam"/>
<document-command title="VcfToIntervalList" main-class="picard.vcf.VcfToIntervalList"/>
</target>
<!-- ALL -->
<target name="all" depends="compile, picard-lib-jar, package-commands, document-standard-options, build-timestamp"
description="Default build target">
<zip zipfile="${dist}/picard-tools-${picard-version}.zip">
<zipfileset dir="${dist}" includes="*.jar" prefix="picard-tools-${picard-version}"/>
<zipfileset dir="${htsjdk_lib_dir}" includes="htsjdk-*.jar" prefix="picard-tools-${picard-version}"/>
<zipfileset dir="${lib}" includes="snappy*.jar"/>
<!-- distribute libJniDeflater.so in same directory as jarfiles-->
<zipfileset dir="${htsjdk}/lib/jni" includes="*" prefix="picard-tools-${picard-version}"/>
</zip>
</target>
<!-- ************************************************************************************** -->
<!-- ************************************************************************************** -->
<!-- Beginning of taskdefs that are used elsewhere in the build file -->
<!-- ************************************************************************************** -->
<!-- ************************************************************************************** -->
<target name="document-standard-options" depends="picard-jar">
<sequential>
<!-- For Sourceforge project website -->
<mkdir dir="${command-line-html-dir}/program_usage"/>
<!-- Generate HTML for each command -->
<java classname="picard.cmdline.CreateHtmlDocForStandardOptions"
output="${command-line-html-dir}/program_usage/standard-options.html"
failonerror="true">
<classpath>
<pathelement location="${dist}/picard.jar"/>
</classpath>
</java>
</sequential>
</target>
<!-- generate HTML documentation for command-line program -->
<macrodef name="document-command">
<attribute name="main-class"/>
<attribute name="title"/>
<element name="filesets" optional="yes"/>
<sequential>
<!-- For Sourceforge project website -->
<mkdir dir="${command-line-html-dir}/program_usage"/>
<mkdir dir="${command-line-html-dir}/inc"/>
<!-- Generate HTML for each command -->
<java classname="picard.cmdline.CreateHtmlDocForProgram"
output="${command-line-html-dir}/program_usage/@{title}.html"
failonerror="true">
<classpath>
<pathelement location="${dist}/picard.jar"/>
</classpath>
<arg value="@{main-class}"/>
</java>
<!-- Generate links to each command -->
<echo file="${command-line-html-dir}/inc/command-line-sidebar.html" append="true"
message="<li><a href="command-line-overview.html#@{title}">@{title}</a>${line.separator}"/>
<!-- include usage for each command -->
<echo file="${command-line-html-dir}/inc/command-line-usage.html" append="true"
message="{% include @{title}.html %}${line.separator}"/>
</sequential>
</macrodef>
<!-- Compile source files specified by includes, from source root. Can specifically
include or exclude-->
<macrodef name="compile-src">
<attribute name="includes" default=""/>
<attribute name="excludes" default=""/>
<attribute name="destdir" default="${classes}"/>
<attribute name="compile.classpath" default="classpath"/>
<attribute name="compiler.args" default=""/>
<sequential>
<mkdir dir="${classes}"/>
<!-- unset the sourcepath attribute in order to compile only files explicitly specified and disable javac's default searching mechanism -->
<javac destdir="@{destdir}"
optimize="${javac.opt}"
debug="${javac.debug}"
sourcepath=""
srcdir="${src}"
includes="@{includes}"
excludes="@{excludes}"
source="${javac.target}"
target="${javac.target}">
<classpath refid="@{compile.classpath}"/>
<compilerarg line="@{compiler.args}"/>
</javac>
</sequential>
</macrodef>
<macrodef name="compile-tests">
<attribute name="includes" default=""/>
<attribute name="excludes" default=""/>
<attribute name="compiler.args" default=""/>
<sequential>
<mkdir dir="${classes.test}"/>
<javac destdir="${classes.test}"
optimize="${javac.opt}"
debug="${javac.debug}"
srcdir="${src.test.java}"
includes="@{includes}"
excludes="@{excludes}"
source="${javac.target}"
target="${javac.target}">
<classpath>
<path refid="classpath"/>
<pathelement location="${classes}"/>
</classpath>
<compilerarg line="@{compiler.args}"/>
</javac>
</sequential>
</macrodef>
</project>