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refs.bib
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@article{Rivera:2004ct,
author = {Rivera, Maria C and Lake, James A},
title = {{The ring of life provides evidence for a genome fusion origin of eukaryotes.}},
journal = {Nature},
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number = {7005},
pages = {152--155},
month = sep,
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}
@article{Lake:2004cy,
author = {Lake, James A and Rivera, Maria C},
title = {{Deriving the genomic tree of life in the presence of horizontal gene transfer: conditioned reconstruction.}},
journal = {Molecular Biology and Evolution},
year = {2004},
volume = {21},
number = {4},
pages = {681--690},
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@article{Friedline:2012fm,
author = {Friedline, C J and Franklin, R B and McCallister, S L and Rivera, M C},
title = {{Bacterial assemblages of the eastern Atlantic Ocean reveal both vertical and latitudinal biogeographic signatures}},
journal = {Biogeosciences},
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pages = {2177--2193},
url={http://www.biogeosciences.net/9/2177/2012/}
}
%% Created using Papers on Tue, 16 Oct 2012.
%% http://mekentosj.com/papers/
@article{Tapias:2004db,
author = {Tapias, Raul and Climent, Jos{\'e} and Pardos, Jose A and Gil, Luis},
title = {{Life histories of Mediterranean pines}},
journal = {Plant Ecology},
year = {2004},
volume = {171},
number = {1/2},
pages = {53--68},
url={http://www.springerlink.com/openurl.asp?id=doi:10.1023/B:VEGE.0000029383.72609.f0}
}
@article{Eckert:2010hd,
author = {Eckert, Andrew J and van Heerwaarden, Joost and Wegrzyn, Jill L and Nelson, C Dana and Ross-Ibarra, Jeffrey and Gonz{\'a}lez-Mart{\'\i}nez, Santiago C and Neale, David B},
title = {{Patterns of population structure and environmental associations to aridity across the range of loblolly pine (\emph{Pinus taeda} L., Pinaceae).}},
journal = {Genetics},
year = {2010},
volume = {185},
number = {3},
pages = {969--982},
month = jul,
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=20439779&retmode=ref&cmd=prlinks}
}
@article{Wymore:2011bm,
author = {Wymore, Adam S and Keeley, Annika T H and Yturralde, Kasey M and Schroer, Melanie L and Propper, Catherine R and Whitham, Thomas G},
title = {{Genes to ecosystems: exploring the frontiers of ecology with one of the smallest biological units.}},
journal = {New Phytologist},
year = {2011},
volume = {191},
number = {1},
pages = {19--36},
month = jul,
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=21631507&retmode=ref&cmd=prlinks}
}
@article{Quesada:2010iu,
author = {Quesada, Tania and Gopal, Vikneswaran and Cumbie, W Patrick and Eckert, Andrew J and Wegrzyn, Jill L and Neale, David B and Goldfarb, Barry and Huber, Dudley A and Casella, George and Davis, John M},
title = {{Association mapping of quantitative disease resistance in a natural population of loblolly pine (\emph{Pinus taeda} L.).}},
journal = {Genetics},
year = {2010},
volume = {186},
number = {2},
pages = {677--686},
month = oct,
url={http://www.genetics.org/content/186/2/677.short}
}
@article{Cosart:2011bq,
author = {Cosart, Ted and Beja-Pereira, Albano and Chen, Shanyuan and Ng, Sarah B and Shendure, Jay and Luikart, Gordon},
title = {{Exome-wide DNA capture and next generation sequencing in domestic and wild species.}},
journal = {BMC Genomics},
year = {2011},
volume = {12},
pages = {347--347},
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=21729323&retmode=ref&cmd=prlinks}
}
@article{Meyer:2010eh,
author = {Meyer, Matthias and Kircher, Martin},
title = {{Illumina sequencing library preparation for highly multiplexed target capture and sequencing.}},
journal = {Cold Spring Harbor Protocols},
year = {2010},
volume = {2010},
number = {6},
pages = {pdb.prot5448},
month = jun,
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=20516186&retmode=ref&cmd=prlinks}
}
@article{Eckert:2008ck,
author = {Eckert, Andrew J and Pande, Barnaly and Ersoz, Elhan S and Wright, Mark H and Rashbrook, Vanessa K and Nicolet, Charles M and Neale, David B},
title = {{High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (\emph{Pinus taeda} L.)}},
journal = {Tree Genetics {\&} Genomes},
year = {2008},
volume = {5},
number = {1},
pages = {225--234},
month = nov,
url={http://www.springerlink.com/index/10.1007/s11295-008-0183-8}
}
@article{GonzalezMartinez:2007gy,
author = {Gonz{\'a}lez-Mart{\'\i}nez, Santiago C and Wheeler, Nicholas C and Ersoz, Elhan and Nelson, C Dana and Neale, David B},
title = {{Association genetics in \emph{Pinus taeda} L. I. Wood property traits.}},
journal = {Genetics},
year = {2007},
volume = {175},
number = {1},
pages = {399--409},
month = jan,
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=17110498&retmode=ref&cmd=prlinks}
}
@article{Moya:2008ek,
author = {Moya, Daniel and Saracino, Antonio and Salvatore, Rossella and Lovreglio, Raffaella and de Las Heras, Jorge and Leone, Vittorio},
title = {{Anatomic basis and insulation of serotinous cones in \emph{Pinus halepensis} Mill}},
journal = {Trees},
year = {2008},
volume = {22},
number = {4},
pages = {511--519},
month = aug,
url={http://www.springerlink.com/content/b351066m25q51139/}
}
@article{Eckert:2009ja,
author = {Eckert, Andrew J and Wegrzyn, Jill L and Pande, Barnaly and Jermstad, Kathleen D and Lee, Jennifer M and Liechty, John D and Tearse, Brandon R and Krutovsky, Konstantin V and Neale, David B},
title = {{Multilocus patterns of nucleotide diversity and divergence reveal positive selection at candidate genes related to cold hardiness in coastal Douglas Fir (\emph{Pseudotsuga menziesii} var. \emph{menziesii}).}},
journal = {Genetics},
year = {2009},
volume = {183},
number = {1},
pages = {289--298},
month = sep,
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=19596906&retmode=ref&cmd=prlinks}
}
@article{Eckert:2009hh,
author = {Eckert, Andrew J and Bower, Andrew D and Wegrzyn, Jill L and Pande, Barnaly and Jermstad, Kathleen D and Krutovsky, Konstantin V and St Clair, J Bradley and Neale, David B},
title = {{Association genetics of coastal Douglas fir (\emph{Pseudotsuga menziesii} var. \emph{menziesii}, Pinaceae). I. Cold-hardiness related traits.}},
journal = {Genetics},
year = {2009},
volume = {182},
number = {4},
pages = {1289--1302},
month = aug,
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=19487566&retmode=ref&cmd=prlinks}
}
@article{Hirschhorn:2005ck,
author = {Hirschhorn, Joel N and Daly, Mark J},
title = {{Genome-wide association studies for common diseases and complex traits.}},
journal = {Nature Reviews Genetics},
year = {2005},
volume = {6},
number = {2},
pages = {95--108},
month = feb,
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=15716906&retmode=ref&cmd=prlinks}
}
@article{Schwilk:2001jd,
author = {Schwilk, D W and Ackerly, D D},
title = {{Flammability and serotiny as strategies: correlated evolution in pines}},
journal = {Nature Methods},
year = {2001},
volume = {94},
number = {2},
pages = {326--336},
url={http://onlinelibrary.wiley.com/doi/10.1034/j.1600-0706.2001.940213.x/abstract}
}
@article{Neale:2007fe,
author = {Neale, David B},
title = {{Genomics to tree breeding and forest health.}},
journal = {Current Opinion in Genetics {\&} Development},
year = {2007},
volume = {17},
number = {6},
pages = {539--544},
month = dec,
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=18060764&retmode=ref&cmd=prlinks}
}
@article{Hohenlohe:2010iu,
author = {Hohenlohe, Paul A and Bassham, Susan and Etter, Paul D and Stiffler, Nicholas and Johnson, Eric A and Cresko, William A},
title = {{Population genomics of parallel adaptation in Threespine Stickleback using sequenced RAD tags.}},
journal = {PLOS Genetics},
year = {2010},
volume = {6},
number = {2},
pages = {e1000862--e1000862},
month = feb,
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=20195501&retmode=ref&cmd=prlinks}
}
@article{GonzalezMartinez:2008gc,
author = {Gonz{\'a}lez-Mart{\'\i}nez, S C and Huber, D and Ersoz, E and Davis, J M and Neale, D B},
title = {{Association genetics in \emph{Pinus taeda} L. II. Carbon isotope discrimination.}},
journal = {Heredity},
year = {2008},
volume = {101},
number = {1},
pages = {19--26},
month = jul,
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=18478029&retmode=ref&cmd=prlinks}
}
@article{Eckert:2012go,
author = {Eckert, Andrew J and Dyer, Rodney J},
title = {{Defining the landscape of adaptive genetic diversity.}},
journal = {Molecular Ecology},
year = {2012},
volume = {21},
number = {12},
pages = {2836--2838},
month = jun,
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=22676074&retmode=ref&cmd=prlinks}
}
@article{He:2012bz,
author = {He, Tianhua and Pausas, Juli G and Belcher, Claire M and Schwilk, Dylan W and Lamont, Byron B},
title = {{Fire-adapted traits of \emph{Pinus} arose in the fiery Cretaceous.}},
journal = {New Phytologist},
year = {2012},
volume = {194},
number = {3},
pages = {751--759},
month = may,
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=22348443&retmode=ref&cmd=prlinks}
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@article{Keeley:2011jw,
author = {Keeley, Jon E and Pausas, Juli G and Rundel, Philip W and Bond, William J and Bradstock, Ross A},
title = {{Fire as an evolutionary pressure shaping plant traits.}},
journal = {Trends in Plant Science},
year = {2011},
volume = {16},
number = {8},
pages = {406--411},
month = aug,
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=21571573&retmode=ref&cmd=prlinks}
}
@article{Grotkopp:2004hi,
author = {Grotkopp, Eva and Rejm{\'a}nek, Marcel and Sanderson, Michael J and Rost, Thomas L},
title = {{Evolution of genome size in pines (\emph{Pinus}) and its life-history correlates: supertree analyses.}},
journal = {Evolution},
year = {2004},
volume = {58},
number = {8},
pages = {1705--1729},
month = aug,
url={http://onlinelibrary.wiley.com/store/10.1111/j.0014-3820.2004.tb00450.x/asset/j.0014-3820.2004.tb00450.x.pdf?v=1&t=h8uusfdb&s=1117549af514e5a3ddd6ccbb80ecfbceb5773023}
}
@article{GonzalezMartinez:2006ij,
author = {Gonz{\'a}lez-Mart{\'\i}nez, Santiago C and Krutovsky, Konstantin V and Neale, David B},
title = {{Forest-tree population genomics and adaptive evolution.}},
journal = {New Phytologist},
year = {2006},
volume = {170},
number = {2},
pages = {227--238},
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=16608450&retmode=ref&cmd=prlinks}
}
@article{Midgley:2011dw,
author = {Midgley, Jeremy and Bond, William},
title = {{Pushing back in time: the role of fire in plant evolution.}},
journal = {New Phytologist},
year = {2011},
volume = {191},
number = {1},
pages = {5--7},
month = jul,
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=21631504&retmode=ref&cmd=prlinks}
}
@article{Gupta:2005fx,
author = {Gupta, Pushpendra K PK and Rustgi, Sachin S and Kulwal, Pawan L PL},
title = {{Linkage disequilibrium and association studies in higher plants: present status and future prospects.}},
journal = {Plant Molecular Biology},
year = {2005},
volume = {57},
number = {4},
pages = {461--485},
month = mar,
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=15821975&retmode=ref&cmd=prlinks}
}
@article{Vega:2008vk,
author = {Vega, J A and Fern{\'a}ndez, C and P{\'e}rez-Gorostiaga, P and Fonturbel, T},
title = {{The influence of fire severity, serotiny, and post-fire management on \emph{Pinus pinaster} Ait.\ recruitment in three burnt areas in Galicia (NW Spain)}},
journal = {Forest Ecology and Management},
year = {2008},
volume = {256},
number = {9},
pages = {1596--1603},
url={http://www.sciencedirect.com/science/article/pii/S0378112708005628}
}
@article{Neale:2004hi,
author = {Neale, David B and Savolainen, Outi},
title = {{Association genetics of complex traits in conifers.}},
journal = {Trends in Plant Science},
year = {2004},
volume = {9},
number = {7},
pages = {325--330},
month = jul,
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=15231277&retmode=ref&cmd=prlinks}
}
@article{Parchman:2012ca,
author = {Parchman, Thomas L and Gompert, Zachariah Z and Mudge, Joann J and Schilkey, Faye D and Benkman, Craig W and Buerkle, C Alex},
title = {{Genome-wide association genetics of an adaptive trait in lodgepole pine.}},
journal = {Molecular Ecology},
year = {2012},
volume = {21},
number = {12},
pages = {2991--3005},
month = jun,
url={http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=22676074&retmode=ref&cmd=prlinks}
}
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