diff --git a/cgatcore/__init__.py b/cgatcore/__init__.py index e69de29b..b81f6279 100644 --- a/cgatcore/__init__.py +++ b/cgatcore/__init__.py @@ -0,0 +1 @@ +from . import remote diff --git a/cgatcore/pipeline/__init__.py b/cgatcore/pipeline/__init__.py index 1223ea63..bd4e7ff8 100644 --- a/cgatcore/pipeline/__init__.py +++ b/cgatcore/pipeline/__init__.py @@ -157,10 +157,13 @@ def loadData(infile, outfile): # Import existing pipeline functionality from cgatcore.pipeline.control import * +from cgatcore.pipeline.database import * from cgatcore.pipeline.files import * from cgatcore.pipeline.cluster import * -from cgatcore.pipeline.parameters import * +from cgatcore.pipeline.execution import * from cgatcore.pipeline.utils import * +from cgatcore.pipeline.parameters import * + # Import original Ruffus decorators from ruffus import ( diff --git a/tests/template_pipeline.py b/tests/template_pipeline.py index 451b9b68..65ff4e22 100644 --- a/tests/template_pipeline.py +++ b/tests/template_pipeline.py @@ -37,7 +37,7 @@ import ruffus import numpy.random import cgatcore.experiment as E -import cgatcore.pipeline as P +from cgatcore import pipeline as P def create_files(outfile):