You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
For paired reads in pipeline_readQC, the input regex is:
r"(?P<track>[^/]+).(?P<suffix>fastq.1.gz|fastq.gz|sra|csfasta.gz|remote)"```
The output of the fastqc task is recorded as
```
"fastqc.dir/{track[0}.fastqc"
```
This would mean that `Tissue-condition-replicate.fastq.1.gz` and `Tissue-condition-replicate.fastq.2.gz` but mapped onto `Tissue-condition-replicate.fastqc`. But in actaul fact the fastqc processor outputs `Tissue-condition_fastq_1.fastqc` and `Tissue-conditions-replicate_fastq_2.fastqc`.
This is mostly harmless other than the fastqc will always be rerun. However it does mean that if `autoremove=1`, the pipeline won't run, as it is looking for `Tissue-conditions-replicate.fastqc`.
The text was updated successfully, but these errors were encountered:
For paired reads in pipeline_readQC, the input regex is:
The text was updated successfully, but these errors were encountered: