index-generation-cargo-test.yml

name: Index Generation NCBI Compress cargo tests

on:
  push:
    paths:
      - 'workflows/index-generation/ncbi-compress/**'

env:
  LC_ALL: C.UTF-8
  LANG: C.UTF-8
  DEBIAN_FRONTEND: noninteractive

jobs:
  cargo-test:
    runs-on: ubuntu-22.04
    steps:
      - uses: actions/checkout@v2
      - name: docker login ghcr.io
        uses: docker/login-action@v1
        with:
            registry: ghcr.io
            username: ${{ github.repository_owner }}
            password: ${{ secrets.GITHUB_TOKEN }}
      - name: docker build + push to ghcr.io
        run: |
          TAG=$(git describe --long --tags --always --dirty)
          IMAGE_NAME=czid-index-generation-public
          IMAGE_URI="ghcr.io/${GITHUB_REPOSITORY}/${IMAGE_NAME}"

          CACHE_FROM=""; docker pull "$IMAGE_URI" && CACHE_FROM="--cache-from $IMAGE_URI"
          ./scripts/docker-build.sh "workflows/index-generation" --tag "${IMAGE_URI}:${TAG}" $CACHE_FROM \
            || ./scripts/docker-build.sh "workflows/index-generation" --tag "${IMAGE_URI}:${TAG}"
          docker push "${IMAGE_URI}:${TAG}"
          if [[ ${GITHUB_REF##*/} == "main" ]]; then
            docker tag "${IMAGE_URI}:${TAG}" "${IMAGE_URI}:latest"
            docker push "${IMAGE_URI}:latest"
          fi

          echo "IMAGE_URI=${IMAGE_URI}" >> $GITHUB_ENV
          echo "TAG=${TAG}" >> $GITHUB_ENV
      - name: run cargo tests
        run: |
          make cargo-test-index-generation