From 0bb19fdfc7136cfde645206caecac186e95016ca Mon Sep 17 00:00:00 2001 From: Ryan Lim Date: Tue, 1 Oct 2024 14:29:57 -0400 Subject: [PATCH] add comment --- workflows/long-read-mngs/run.wdl | 2 ++ 1 file changed, 2 insertions(+) diff --git a/workflows/long-read-mngs/run.wdl b/workflows/long-read-mngs/run.wdl index 99a2f34d..1335edff 100644 --- a/workflows/long-read-mngs/run.wdl +++ b/workflows/long-read-mngs/run.wdl @@ -1280,6 +1280,8 @@ workflow czid_long_read_mngs { String library_type = "RNA" String guppy_basecaller_setting = "hac" # fast, hac, super + # The subsample_depth used to be 4000000 because to get 1 million reads we need to get + # 4 * 1000000 lines. But since we switched to using seqtk, we only need to provide the total number of reads. Int subsample_depth = 1000000 File minimap_host_db