diff --git a/workflows/amr/run.wdl b/workflows/amr/run.wdl index 993a22211..85e280dfa 100644 --- a/workflows/amr/run.wdl +++ b/workflows/amr/run.wdl @@ -23,7 +23,7 @@ workflow amr { String s3_wd_uri = "" } if (defined(raw_reads_0)) { - Array[File]+ raw_reads = select_all(select_first([raw_reads_0]), select_first([raw_reads_1])) + Array[File]+ raw_reads = select_all([select_first([raw_reads_0]), select_first([raw_reads_1])]) call host_filter.czid_host_filter as host_filter_stage { input: