From 2716c92ece95df0d2ace2934aa6e421085cb19b4 Mon Sep 17 00:00:00 2001 From: Mike Lin Date: Sat, 12 Aug 2023 15:31:50 -1000 Subject: [PATCH] bump dependencies --- README.md | 2 +- WDL/runtime/config_templates/default.cfg | 10 ++++++---- requirements.dev.txt | 2 +- 3 files changed, 8 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index eeb4369e..079db6c0 100644 --- a/README.md +++ b/README.md @@ -9,7 +9,7 @@ ## Install miniwdl -Installation requires Python 3.6+, pip3 (or conda) and Docker (or Podman/Singularity/udocker). Linux preferred; [macOS compatible with extra steps](https://github.com/chanzuckerberg/miniwdl/issues/145). More detail in [full documentation](https://miniwdl.readthedocs.io/en/latest/getting_started.html). +Installation requires Python 3.6+, pip3 (or conda) and Docker (or Podman/Singularity/udocker). Linux preferred; [macOS (Intel) compatible with extra steps](https://github.com/chanzuckerberg/miniwdl/issues/145). More detail in [full documentation](https://miniwdl.readthedocs.io/en/latest/getting_started.html). - Install with pip [![PyPI version](https://img.shields.io/pypi/v/miniwdl.svg)](https://pypi.org/project/miniwdl/) : run `pip3 install miniwdl` - Install with conda [![Anaconda-Server Badge](https://anaconda.org/conda-forge/miniwdl/badges/version.svg)](https://anaconda.org/conda-forge/miniwdl) : run `conda install -c conda-forge miniwdl` diff --git a/WDL/runtime/config_templates/default.cfg b/WDL/runtime/config_templates/default.cfg index 9482cf5c..33d02c99 100644 --- a/WDL/runtime/config_templates/default.cfg +++ b/WDL/runtime/config_templates/default.cfg @@ -204,7 +204,7 @@ flock = true [download_aria2c] # see: https://github.com/chanzuckerberg/miniwdl/tree/main/tools_image -docker = ghcr.io/miniwdl-ext/miniwdl-tools:Id_sha256_bc1b60cb6fb7274bb8d215c9646d53b4f4d4fcb099e56ca2dda9ce2013a7a1bc +docker = ghcr.io/miniwdl-ext/miniwdl-tools:Id_sha256_6cf3c7e37141ee50cbd692b872f4cbb92ecaab9eccc899263f6bcbea8f45a8b4 [download_awscli] @@ -217,12 +217,14 @@ docker = ghcr.io/miniwdl-ext/miniwdl-tools:Id_sha256_bc1b60cb6fb7274bb8d215c9646 # Failing all of the above, public S3 URIs can always be used. host_credentials = false # see: https://github.com/chanzuckerberg/miniwdl/tree/main/tools_image -docker = ghcr.io/miniwdl-ext/miniwdl-tools:Id_sha256_bc1b60cb6fb7274bb8d215c9646d53b4f4d4fcb099e56ca2dda9ce2013a7a1bc +docker = ghcr.io/miniwdl-ext/miniwdl-tools:Id_sha256_6cf3c7e37141ee50cbd692b872f4cbb92ecaab9eccc899263f6bcbea8f45a8b4 [download_gsutil] -# current version from https://github.com/GoogleCloudPlatform/cloud-sdk-docker/releases -docker = gcr.io/google.com/cloudsdktool/cloud-sdk:427.0.0-slim +# current version: +# docker pull gcr.io/google.com/cloudsdktool/cloud-sdk:slim +# docker run gcr.io/google.com/cloudsdktool/cloud-sdk:slim gcloud version +docker = gcr.io/google.com/cloudsdktool/cloud-sdk:442.0.0-slim [call_cache] diff --git a/requirements.dev.txt b/requirements.dev.txt index d932739c..c75e475d 100644 --- a/requirements.dev.txt +++ b/requirements.dev.txt @@ -2,7 +2,7 @@ # requirements.txt which are needed for miniwdl to run in common use. -r requirements.txt pyre-check==0.0.27 -black==23.1.0 +black==23.7.0 pylint sphinx sphinx-autobuild