From 316af40ca93bcdab6a02c659d5ff8873b2772ae1 Mon Sep 17 00:00:00 2001
From: Mike Lin <dna@mlin.net>
Date: Sat, 27 Mar 2021 16:02:50 -1000
Subject: [PATCH] bump version of broadinstitute/warp used for tests (#492)

---
 test_corpi/broadinstitute/warp |  2 +-
 tests/test_3corpi.py           | 15 +++++----------
 2 files changed, 6 insertions(+), 11 deletions(-)

diff --git a/test_corpi/broadinstitute/warp b/test_corpi/broadinstitute/warp
index 47c17218..b3eee1da 160000
--- a/test_corpi/broadinstitute/warp
+++ b/test_corpi/broadinstitute/warp
@@ -1 +1 @@
-Subproject commit 47c17218fdcd773c68a37439a959ae4f63884ea0
+Subproject commit b3eee1daf5cc9239620f4212534d92b8322754fe
diff --git a/tests/test_3corpi.py b/tests/test_3corpi.py
index bab98777..8aa47dae 100644
--- a/tests/test_3corpi.py
+++ b/tests/test_3corpi.py
@@ -521,20 +521,15 @@ class BioWDLSmallRNA(unittest.TestCase):
 @wdl_corpus(
     ["test_corpi/broadinstitute/warp/pipelines/broad/**"],
     path=[["test_corpi/broadinstitute/warp/tasks"]],
-    # has a task with a name collision between output & input
-    blacklist=[
-        "JointGenotyping",
-        "JointGenotypingByChromosomePartOne",
-        "JointGenotypingByChromosomePartTwo",
-    ],
     expected_lint={
         "UnusedImport": 22,
-        "StringCoercion": 63,
-        "UnusedDeclaration": 79,
+        "UnusedCall": 1,
+        "StringCoercion": 86,
+        "UnusedDeclaration": 106,
         "NameCollision": 12,
-        "ForwardReference": 4,
+        "ForwardReference": 5,
         "NonemptyCoercion": 4,
-        "FileCoercion": 3,
+        "FileCoercion": 17,
     },
     check_quant=False,
 )