README.md

Dissertation

This repository tracks the official dissertation. The goal is to provide a fully reproducible and digitally-born dissertation, which I can easily export to paper format to fullfill my university's requirements. The bookdown-borne dissertation is a work in progress but already available at the static webpage for this repository.

You can rerun the entire compilation process by running the following from R, with the repository as the working directory (assuming you have all dependencies!)

bookdown::render_book('index.Rmd', "bookdown::pdf_book")

The R dependencies are AFAIK

bookdown
car
devtools
ggplot2
kableExtra
knitr
latex2exp
magrittr
pROC
plyr
viridis
xtable

Remember that there might be other dependencies like pandoc, pandoc-citeproc, and some LaTeX dependencies I haven't included and depend on your installation.

For the PDF, I did some manual adjustments to get to the final version because LaTeX...

Outline

Contributions towards understanding and building sustainable science

0. Introduction chapter short

• Ready

1. Research practices and assessment of research misconduct

• Preprint: NA
• Status: published in ScienceOpen (license: CC-BY 4.0)
• Data: NA
• Reproducibility packet:
• License: CC BY 4.0
• Bookdown-ready

2. Reanalyzing Head et al. (2015): Investigating the robustness of widespread p-hacking

• Preprint: PeerJ preprints
• Status: published in PeerJ
• Data: data from original Head et al. paper, available on Dryad
• Reproducibility packet:
• License: CC 0 rights waiver
• Bookdown-ready

3. Distributions of p-values between .01-.05 in psychology: what is really going on?

• Preprint: PeerJ preprints
• Status: published in PeerJ
• Data: https://osf.io/gdr4q/
• Reproducibility packet: https://osf.io/4d2g9/
• License: CC BY 4.0
• Bookdown-ready

4. Too good to be false: Nonsignificant results revisited

• Preprint: PsyArxiv
• Status: published in Collabra
• Data: direct downloads linked in Sweave file
• Reproducibility packet:
• License: CC BY 4.0
• Bookdown-ready

5. 688,112 Statistical Results: Content Mining Psychology Articles for Statistical Test Results

• Preprint: MDPI preprints
• Status: published in Data (license: CC-BY 4.0)
• Data: EASY-DANS
• Reproducibility packet:
• License: CC BY 4.0
• Bookdown-ready

6. Detection of data fabrication using statistical tools

• Preprint: PsyArxiv
• Status: Ready to submit
• Data: GitHub and archived in the reproducibility packet
• Reproducibility packet:
• Bookdown-ready

7. Extracting data from vector figures in scholarly articles

• Preprint: https://arxiv.org/abs/1709.02261
• Status: manuscript that underwent public feedback
• Data: see reproducibility packet
• Reproducibility packet:
• License: CC 0 rights waiver
• Bookdown-ready

8. "As-you-go" instead of "after-the-fact": A network approach to scholarly communication and evaluation

• Preprint: https://doi.org/10.7287/peerj.preprints.26462v1
• Status: published in Publications
• Data: NO DATA
• Reproducibility packet:
• License: CC 0 rights waiver
• Bookdown-ready

9. Verified, shared, modular research communication with the Dat protocol

• Preprint: https://dat-com-chris.hashbase.io/
• Status: Publications
• Data: NO DATA
• Reproducibility packet:
• License: CC 0 rights waiver
• Bookdown-ready

10. Epilogue

• Done