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gfs_pv_1.2_3D.py
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gfs_pv_1.2_3D.py
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#
# python code for some calculations related to the dynamic tropopause (DT) -
# DT pressure, DT potential temperature, 330K PV,
# and a cross-section of PV at the latitude where the tropopause is lowest -
# all based on the GFS analysis available online. As the data is accessed
# online, the program can take a while to run.
#
# the date and lat-lon range can be set below
#
# (poorly) coded by Mathew Barlow
# initial release: 14 Nov 2017
# last updated: 5 Dec 2017
#
# this code has *not* been extensively tested and has been
# awkwardly translated from other coding languages, so if you find
# any errors or have any suggestions or improvements, including for
# the plotting, please let me know at [email protected] . Thanks!
#
# Support from NSF AGS-1623912 is gratefully acknowledged
#
import numpy as np
import netCDF4
import matplotlib.pyplot as plt
import matplotlib.ticker as mticker
from mpl_toolkits.mplot3d import axes3d
import cartopy.crs as ccrs
from scipy.ndimage import gaussian_filter
from cartopy.feature import NaturalEarthFeature
from cartopy.mpl.gridliner import LONGITUDE_FORMATTER, LATITUDE_FORMATTER
from datetime import datetime
# VALUES TO SET *************************************************
# set date, lat-lon range, and PV-value definition of tropopause
mydate='20171205'
myhour='12'
(lat1,lat2)=(20,60)
(lon1,lon2)=(-140,-50)
tpdef=2 # definition of tropopause in PVU
#****************************************************************
lon1=lon1+360
lon2=lon2+360
#constants
re=6.37e6
g=9.81
cp=1004.5
r=2*cp/7
kap=r/cp
omega=7.292e-5
pi=3.14159265
# open dataset, retreive variables, close dataset
url='http://nomads.ncep.noaa.gov:80/dods/gfs_0p25/gfs'+\
mydate+'/gfs_0p25_'+myhour+'z_anl'
file = netCDF4.Dataset(url)
lat_in = file.variables['lat'][:]
lon_in = file.variables['lon'][:]
lev = file.variables['lev'][:]
pres2pv_in = file.variables['pres2pv'][0,:,:]
pressfc_in = file.variables['pressfc'][0,:,:]
t_in = file.variables['tmpprs'][0,:,:,:]
u_in = file.variables['ugrdprs'][0,:,:,:]
v_in = file.variables['vgrdprs'][0,:,:,:]
hgt_in = file.variables['hgtprs'][0,:,:,:]
file.close()
# get array indices for lat-lon range
# specified above
iy1 = np.argmin( np.abs( lat_in - lat1 ) )
iy2 = np.argmin( np.abs( lat_in - lat2 ) )
ix1 = np.argmin( np.abs( lon_in - lon1 ) )
ix2 = np.argmin( np.abs( lon_in - lon2 ) )
# select specified lat-lon range
t=t_in[:,iy1:iy2,ix1:ix2]
lon=lon_in[ix1:ix2]
lat=lat_in[iy1:iy2]
u=u_in[:,iy1:iy2,ix1:ix2]
v=v_in[:,iy1:iy2,ix1:ix2]
hgt=hgt_in[:,iy1:iy2,ix1:ix2]
pres2pv=pres2pv_in[iy1:iy2,ix1:ix2]
pressfc=pressfc_in[iy1:iy2,ix1:ix2]
# some prep work for derivatives
xlon,ylat=np.meshgrid(lon,lat)
dlony,dlonx=np.gradient(xlon)
dlaty,dlatx=np.gradient(ylat)
dx=re*np.cos(ylat*pi/180)*dlonx*pi/180
dy=re*dlaty*pi/180
# define potential temperature and Coriolis parameter
theta=t*(1.E5/(lev[:,np.newaxis,np.newaxis]*100))**kap
f=2*omega*np.sin(ylat*pi/180)
# calculate derivatives
# (np.gradient can handle 1D uneven spacing,
# so build that in for p, but do dx and dy
# external to the function since they are 2D)
ddp_theta=np.gradient(theta,lev*100,axis=0)
ddx_theta=np.gradient(theta,axis=2)/dx
ddy_theta=np.gradient(theta,axis=1)/dy
ddp_u=np.gradient(u,lev*100,axis=0)
ddp_v=np.gradient(v,lev*100,axis=0)
ddx_v=np.gradient(v,axis=2)/dx
ddy_ucos=np.gradient(u*np.cos(ylat*pi/180),axis=1)/dy
# calculate contributions to PV and PV
absvort=ddx_v-(1/np.cos(ylat*pi/180))*ddy_ucos+f
pv_one=g*absvort*(-ddp_theta)
pv_two=g*(ddp_v*ddx_theta-ddp_u*ddy_theta)
pv=pv_one+pv_two
# calculate pressure of tropopause, Fortran-style (alas!)
# as well as potential temperature (theta) and height
#
# starting from 10hPa and working down, to avoid
# more complicated vertical structure higher up
#
nx=ix2-ix1+1
ny=iy2-iy1+1
nz=lev.size
nzs=np.argwhere(lev==10.0)[0,0]
tp=np.empty((ny-1,nx-1))*np.nan # initialize as undef
tp_theta=np.empty((ny-1,nx-1))*np.nan # initialize as undef
tp_hgt=np.empty((ny-1,nx-1))*np.nan # initialize as undef
for ix in range(0,nx-1):
for iy in range(0,ny-1):
for iz in range(nzs,0,-1):
if pv[iz,iy,ix]/1e-6<=tpdef:
if np.isnan(tp[iy,ix]):
tp[iy,ix]=(
(lev[iz]*(pv[iz+1,iy,ix]-tpdef*1e-6)
-lev[iz+1]*(pv[iz,iy,ix]-tpdef*1e-6))/
(pv[iz+1,iy,ix]-pv[iz,iy,ix])
)
tp_theta[iy,ix]=(
((lev[iz]-tp[iy,ix])*theta[iz+1,iy,ix]+
(tp[iy,ix]-lev[iz+1])*theta[iz,iy,ix])/
(lev[iz]-lev[iz+1])
)
tp_hgt[iy,ix]=(
((lev[iz]-tp[iy,ix])*hgt[iz+1,iy,ix]+
(tp[iy,ix]-lev[iz+1])*hgt[iz,iy,ix])/
(lev[iz]-lev[iz+1])
)
# calculate PV on the 330K isentropic surface
# (also not in a pythonic way)
nx=ix2-ix1+1
ny=iy2-iy1+1
nz=lev.size
pv330=np.empty((ny-1,nx-1))*np.nan # initialize as undef
for ix in range(0,nx-1):
for iy in range(0,ny-1):
for iz in range(nz-2,0,-1):
if theta[iz,iy,ix]>=330:
if theta[iz-1,iy,ix]<=330:
if np.isnan(pv330[iy,ix]):
pv330[iy,ix]=(
((330-theta[iz-1,iy,ix])*pv[iz,iy,ix]+
(theta[iz,iy,ix]-330)*pv[iz-1,iy,ix])/
(theta[iz,iy,ix]-theta[iz-1,iy,ix])
)
# slight smoothing of result
# (appears to work better than smoothing u,v,t first)
tp=gaussian_filter(tp,sigma=1)
tp_theta=gaussian_filter(tp_theta,sigma=1)
pv330=gaussian_filter(pv330,sigma=1)
# define spatial correlation function for testing results
def scorr(a,b):
abar=np.mean(a)
bbar=np.mean(b)
covar=sum((a-abar)*(b-bbar))
avar=sum((a-abar)**2)
bvar=sum((b-bbar)**2)
r=covar/np.sqrt(avar*bvar)
return(r)
# identify latitude of lowest tropopause
maxloc=np.argwhere(tp==np.amax(tp))
latmax=lat[maxloc[0,0]]
# now make some plots - these badly need to be improved
states = NaturalEarthFeature(category='cultural',
scale='50m', facecolor='none',
name='admin_1_states_provinces_shp')
# get date for plotting
fdate=datetime.strptime(mydate, '%Y%m%d').strftime('%d %b %Y')
# plot of DT pressure
plt.figure(1)
ax = plt.axes(projection=ccrs.PlateCarree( ))
ax.set_extent([lon1,lon2,lat1,lat2],crs=ccrs.PlateCarree())
clevs=np.arange(50,800,50)
plt.contour(lon,lat,tp,clevs,transform=ccrs.PlateCarree(),colors='black',
linewidths=0.5)
cp=plt.contourf(lon,lat,tp,clevs,transform=ccrs.PlateCarree(),cmap='RdPu')
gl = ax.gridlines(draw_labels=True)
plt.contour(lon,lat,ylat,[latmax],transform=ccrs.PlateCarree(),colors='white',
linewidths=1,linestyles='dashed')
cbar = plt.colorbar(cp, ticks=clevs, orientation='horizontal')
cbar.set_label('hPa')
ax.add_feature(states, linewidth=0.8, color='gray')
ax.coastlines('50m', linewidth=0.8,color='gray')
gl.xlabels_top = gl.ylabels_right = False
gl.xformatter = LONGITUDE_FORMATTER
gl.yformatter = LATITUDE_FORMATTER
gl.xlocator = mticker.FixedLocator(np.arange(lon1-360,lon2-360+10,10))
gl.ylocator = mticker.FixedLocator(np.arange(lat1,lat2+5,5))
plt.title('Dynamic Tropopause (2PVU) Pressure\n'+myhour+'Z '+fdate)
plt.figure(2)
ax = plt.axes(projection=ccrs.PlateCarree( ))
ax.set_extent([lon1,lon2,lat1,lat2],crs=ccrs.PlateCarree())
clevs2=np.arange(260,400,10)
plt.contour(lon,lat,tp_theta,clevs2,transform=ccrs.PlateCarree(),
colors='black',linewidths=0.5)
cp=plt.contourf(lon,lat,tp_theta,clevs2,transform=ccrs.PlateCarree(),
cmap='RdBu_r')
cbar = plt.colorbar(cp, ticks=clevs2, orientation='horizontal')
cbar.set_label('K')
ax.add_feature(states, linewidth=0.8, color='gray')
ax.coastlines('50m', linewidth=0.8,color='gray')
gl = ax.gridlines(draw_labels=True)
gl.xlabels_top = gl.ylabels_right = False
gl.xformatter = LONGITUDE_FORMATTER
gl.yformatter = LATITUDE_FORMATTER
gl.xlocator = mticker.FixedLocator(np.arange(lon1-360,lon2-360+10,10))
gl.ylocator = mticker.FixedLocator(np.arange(lat1,lat2+5,5))
plt.title('Dynamic Tropopause (2PVU) Potential Temperature\n'+myhour+'Z '+fdate)
plt.figure(3)
ax = plt.axes(projection=ccrs.PlateCarree( ))
ax.set_extent([lon1,lon2,lat1,lat2],crs=ccrs.PlateCarree())
clevs2=np.arange(-10,11,1)
plt.contour(lon,lat,pv330/1e-6,clevs2,transform=ccrs.PlateCarree(),
colors='black',linewidths=0.5)
cp=plt.contourf(lon,lat,pv330/1e-6,clevs2,transform=ccrs.PlateCarree(),
cmap='RdBu_r')
cbar = plt.colorbar(cp, ticks=clevs2, orientation='horizontal')
cbar.set_label('PVU')
ax.add_feature(states, linewidth=0.8, color='gray')
ax.coastlines('50m', linewidth=0.8,color='gray')
gl = ax.gridlines(draw_labels=True)
gl.xlabels_top = gl.ylabels_right = False
gl.xformatter = LONGITUDE_FORMATTER
gl.yformatter = LATITUDE_FORMATTER
gl.xlocator = mticker.FixedLocator(np.arange(lon1-360,lon2-360+10,10))
gl.ylocator = mticker.FixedLocator(np.arange(lat1,lat2+5,5))
plt.title('Potential Vorticity on the 330K Surface\n'+myhour+'Z '+fdate)
plt.figure(4)
# P-lon cross-section of PV at latitude
# of lowest tropopause
ax = plt.axes()
pv_smooth=gaussian_filter(pv,sigma=1)
theta_smooth=gaussian_filter(theta,sigma=1)
plt.ylim(lev[0],lev[20])
#plt.yscale('log')
clevs=np.arange(2,32,2)
plt.contour(lon-360,lev[0:21],pv_smooth[0:21,maxloc[0,0],:]/1e-6,clevs,
colors='black')
cp=plt.contourf(lon-360,lev[0:21],pv_smooth[0:21,maxloc[0,0],:]/1e-6,clevs,
cmap='RdPu')
clevs2=np.arange(260,490,10)
plt.contour(lon-360,lev[0:21],theta_smooth[0:21,maxloc[0,0],:],[330],
colors='blue',linewidths=1.2)
cs=plt.contour(lon-360,lev[0:21],theta_smooth[0:21,maxloc[0,0],:],clevs2,
colors='blue',linewidths=0.5)
plt.clabel(cs,inline=1,fontsize=8,fmt='%4.0f')
cbar = plt.colorbar(cp, ticks=clevs, orientation='horizontal')
cbar.set_label('PVU')
plt.title('LON-P Cross-section of PV (shading) and '+r'$\theta$'+
' (blue contours) at '+str(latmax)+'N\n'+myhour+'Z '+fdate)
plt.show()
plt.figure(5,figsize=plt.figaspect(0.5))
pressfc_smooth=gaussian_filter(pressfc,sigma=1)
ax=plt.gca(projection='3d')
surf=ax.plot_surface(xlon,ylat,tp,cmap="coolwarm",alpha=0.3,
rstride=1,cstride=1,
linewidth=0, antialiased=False)
ax.plot_surface(xlon,ylat,pressfc_smooth/100,color="lightgray",
rstride=1,cstride=1,
linewidth=0, antialiased=False)
# maybe set rcount, count to size of array
# rstride,cstride=1
#ax.invert_zaxis()
ax.set_zlim(1000,100)
ax.set_xlim(lon1,lon2)
ax.set_ylim(lat1,lat2)
ax.view_init(elev=75,azim=-90)
plt.title('2PVU Dynamic Tropopause over topography\n'+myhour+'Z '+fdate)
plt.colorbar(surf)
plt.show()
plt.figure(6,figsize=plt.figaspect(0.5))
pressfc_smooth=gaussian_filter(pressfc,sigma=1)
ax=plt.gca(projection='3d')
surf=ax.plot_surface(xlon,ylat,tp,cmap="coolwarm",alpha=0.3,
rstride=1,cstride=1,
linewidth=0, antialiased=False)
ax.plot_surface(xlon,ylat,pressfc_smooth/100,color="lightgray",
rstride=1,cstride=1,
linewidth=0, antialiased=False)
# maybe set rcount, count to size of array
# rstride,cstride=1
#ax.invert_zaxis()
ax.set_zlim(1000,100)
ax.set_xlim(lon1,lon2)
ax.set_ylim(lat1,lat2)
ax.view_init(elev=0,azim=-90)
plt.title('2PVU Dynamic Tropopause over topography\n'+myhour+'Z '+fdate)
plt.colorbar(surf)
plt.show()
plt.figure(7,figsize=plt.figaspect(0.5))
pressfc_smooth=gaussian_filter(pressfc,sigma=1)
ax=plt.gca(projection='3d')
surf=ax.plot_surface(xlon,ylat,tp,cmap="coolwarm",alpha=0.3,
rstride=1,cstride=1,
linewidth=0, antialiased=False)
ax.plot_surface(xlon,ylat,pressfc_smooth/100,color="lightgray",
rstride=1,cstride=1,
linewidth=0, antialiased=False)
# maybe set rcount, count to size of array
# rstride,cstride=1
#ax.invert_zaxis()
ax.set_zlim(1000,100)
ax.set_xlim(lon1,lon2)
ax.set_ylim(lat1,lat2)
ax.view_init(elev=90,azim=-90)
plt.title('2PVU Dynamic Tropopause over topography\n'+myhour+'Z '+fdate)
plt.colorbar(surf)
plt.show()