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publicTrackDb.txt
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publicTrackDb.txt
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track cytoBandIdeo
longLabel Chromosome ideogram with cytogenetic bands
shortLabel cytoBandIdeo
bigDataUrl https://raw.githubusercontent.com/chenhijy/oryLat04_assemblyHub/main/oryLat04.cytoBandIdeo.bb
type bigBed
track oryLat04.gapTrack
type bigBed 3
bigDataUrl https://raw.githubusercontent.com/chenhijy/oryLat04_assemblyHub/main/oryLat04.gapTrack.bb
shortLabel oryLat04 gapTrack
longLabel oryLat04 assembly gap (NNNs) track
visibility pack
priority 1
track oryLat04_genePred
type bigGenePred
bigDataUrl https://raw.githubusercontent.com/chenhijy/oryLat04_assemblyHub/main/oryLat04.ensembl98.bb
shortLabel oryLat04_genes
longLabel Japanese Medaka (oryLat04|ASM223467v1) ensembl98 genes
labelFields name,geneID,type,geneName,geneSymbol,geneDescription,cdsStartStat,cdsEndStat
defaultLabelFields geneSymbol,geneID
searchIndex name,geneID,geneSymbol,geneDescription
searchTrix https://raw.githubusercontent.com/chenhijy/oryLat04_assemblyHub/main/oryLat04.ensembl98.ix
visibility pack
priority 2
track results_CONDELs
shortLabel CONDEL_RESULTS
longLabel CONDEL_RESULTS
bigDataUrl https://raw.githubusercontent.com/chenhijy/oryLat04_assemblyHub/main/20220918_1920_RESULTS_med0.1map_200kbTSSpad_syngnathTetraod_17of29ogNoPriCar_1viol.CONDELS.bb
type bigBed
visibility pack
priority 3
track results_DELs
shortLabel DEL_RESULTS
longLabel DEL_RESULTS
bigDataUrl https://raw.githubusercontent.com/chenhijy/oryLat04_assemblyHub/main/20220918_1920_RESULTS_med0.1map_200kbTSSpad_syngnathTetraod_17of29ogNoPriCar_1viol.DELs.bb
type bigBed
visibility pack
priority 3
track pelA_blastHits
shortLabel pelA_blastHits
longLabel pelA_blastHits
bigDataUrl https://raw.githubusercontent.com/chenhijy/oryLat04_assemblyHub/main/oryLat04_pelA_blastHits.bb
type bigBed 4
visibility pack
priority 3
track orthologousChains
compositeTrack on
shortLabel orthologousChains
longLabel orthologous sequence alignments
type bigChain
visibility pack
track ampCit01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352072
linkDataUrl https://figshare.com/ndownloader/files/41352105
shortLabel ampCit01
longLabel Midas Cichlid (+)
priority 4
track oreNil02_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352426
linkDataUrl https://figshare.com/ndownloader/files/41352567
shortLabel oreNil02
longLabel Nile Tilapia (+)
priority 5
track neoBri01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352411
linkDataUrl https://figshare.com/ndownloader/files/41352102
shortLabel neoBri01
longLabel Lyretail Cichlid (+)
priority 6
track hapBur01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352303
linkDataUrl https://figshare.com/ndownloader/files/41352132
shortLabel hapBur01
longLabel Burton's Mouthbrooder (+)
priority 7
track punNye01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352171
linkDataUrl https://figshare.com/ndownloader/files/41352168
shortLabel punNye01
longLabel Victorian Cichlid (+)
priority 8
track mayZeb03_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352354
linkDataUrl https://figshare.com/ndownloader/files/41352357
shortLabel mayZeb03
longLabel Zebra Mbuna (+)
priority 9
track notFur02_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352456
linkDataUrl https://figshare.com/ndownloader/files/41352420
shortLabel notFur02
longLabel Turquoise Killifish (+)
priority 10
track kryMar01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352321
linkDataUrl https://figshare.com/ndownloader/files/41352084
shortLabel kryMar01
longLabel Mangrove Rivulus (+)
priority 11
track ausLim01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352087
linkDataUrl https://figshare.com/ndownloader/files/41352114
shortLabel ausLim01
longLabel Annual Killifish (+)
priority 12
track xipCou01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352555
linkDataUrl https://figshare.com/ndownloader/files/41352159
shortLabel xipCou01
longLabel Monterrey Platyfish (+)
priority 14
track xipHel01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352189
linkDataUrl https://figshare.com/ndownloader/files/41352561
shortLabel xipHel01
longLabel Green Swordtail (+)
priority 15
track xipMac02_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352135
linkDataUrl https://figshare.com/ndownloader/files/41352153
shortLabel xipMac02
longLabel Southern Platyfish (+)
priority 13
track poeFor01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352441
linkDataUrl https://figshare.com/ndownloader/files/41352447
shortLabel poeFor01
longLabel Amazon Molly (+)
priority 16
track poeRet02_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352450
linkDataUrl https://figshare.com/ndownloader/files/41352453
shortLabel poeRet02
longLabel Guppy (+)
priority 17
track funHet01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352279
linkDataUrl https://figshare.com/ndownloader/files/41352288
shortLabel funHet01
longLabel Mummichog (+)
priority 18
track latCal01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352312
linkDataUrl https://figshare.com/ndownloader/files/41352126
shortLabel latCal01
longLabel Asian Seabass (+)
priority 19
track parOli02_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352432
linkDataUrl https://figshare.com/ndownloader/files/41352438
shortLabel parOli02
longLabel Japanese Flounder - 2 pelvic fins, 18-19 caudal rays (+)
priority 20
track cynSem_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352264
linkDataUrl https://figshare.com/ndownloader/files/41352075
shortLabel cynSem
longLabel Tongue Sole - 1 pelvic fin, 8-10 caudal rays (+/-)
priority 21
track serDum01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352570
linkDataUrl https://figshare.com/ndownloader/files/41352558
shortLabel serDum01
longLabel Greater Amberjack (+)
priority 22
track serQui01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352165
linkDataUrl https://figshare.com/ndownloader/files/41352183
shortLabel serQui01
longLabel Japanese Amberjack (+)
priority 23
track monAlb01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352402
linkDataUrl https://figshare.com/ndownloader/files/41352129
shortLabel monAlb01
longLabel Rice Eel [-]
priority 24
track gasAcu14_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352282
linkDataUrl https://figshare.com/ndownloader/files/41352108
shortLabel gasAcu14
longLabel Threespine Stickleback (+)
priority 26
track punPun02_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352096
linkDataUrl https://figshare.com/ndownloader/files/41352651
shortLabel punPun02
longLabel Ninespine Stickleback (+)
priority 27
track takFla02_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352564
linkDataUrl https://figshare.com/ndownloader/files/41352180
shortLabel takFla02
longLabel Yellowbelly Puffer [-]
priority 28
track takRub01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352174
linkDataUrl https://figshare.com/ndownloader/files/41352162
shortLabel takRub01
longLabel Japanese Puffer [-]
priority 29
track tetNig2_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352186
linkDataUrl https://figshare.com/ndownloader/files/41352192
shortLabel tetNig2
longLabel Green Spotted Puffer [-]
priority 30
track molMol01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352549
linkDataUrl https://figshare.com/ndownloader/files/41352399
shortLabel molMol01
longLabel Ocean Sunfish [-]
priority 31
track larCro01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352459
linkDataUrl https://figshare.com/ndownloader/files/41352351
shortLabel larCro01
longLabel Yellow Croaker (+)
priority 32
track miiMii01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352360
linkDataUrl https://figshare.com/ndownloader/files/41352150
shortLabel miiMii01
longLabel Mi-iuy Croaker (+)
priority 33
track dicLab01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352117
linkDataUrl https://figshare.com/ndownloader/files/41352081
shortLabel dicLab01
longLabel European Seabass (+)
priority 34
track labBer01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352318
linkDataUrl https://figshare.com/ndownloader/files/41352345
shortLabel labBer01
longLabel Ballan Wrasse (+)
priority 35
track bolPec01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352111
linkDataUrl https://figshare.com/ndownloader/files/41352066
shortLabel bolPec01
longLabel Great Blue-Spotted Mudskipper (+)
priority 39
track synSco01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352573
linkDataUrl https://figshare.com/ndownloader/files/41352177
shortLabel synSco01
longLabel Gulf Pipefish [-]
priority 36
track hipCom01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352123
linkDataUrl https://figshare.com/ndownloader/files/41352069
shortLabel hipCom01
longLabel Tiger Tail Seahorse [-]
priority 38
track hipEre01_orthoChains
parent orthologousChains on
type bigChain
bigDataUrl https://figshare.com/ndownloader/files/41352315
linkDataUrl https://figshare.com/ndownloader/files/41352138
shortLabel hipEre01
longLabel Lined Seahorse [-]
priority 37